scFunctions:单细胞数据分析功能
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2021-05-28
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scFunctions-master.zip （65个子文件） 
scFunctions-master 
.gitignore 29B NAMESPACE 932B R binarize_regulons_nextflow.R 1KB extract_data_for_shiny_clustering.R 2KB binarize_regulons.R 1KB plot_csi_modules.R 1KB calculate_rrs.R 3KB prepare_clustering_for_shiny.R 4KB auc_thresh_kmeans.R 2KB Impute_Seurat_MAGIC.R 2KB perform_fgsea.R 5KB export_seurat_to_shiny_scCluster.R 4KB summarize_cell_types.R 3KB plot_bin_regulon_UMAP.R 2KB export_data_from_seurat.R 2KB auc_thresh_kmeans_nextflow.R 2KB calc_csi_module_activity.R 2KB plot_rrs_ranking.R 3KB calculate_csi.R 2KB DE_Seurat.R 11KB .Rbuildignore 28B .DS_Store 6KB man binarize_regulons.Rd 934B plot_bin_regulon_UMAP.Rd 987B auc_thresh_kmeans_nextflow.Rd 1KB perform_fgsea.Rd 972B prepare_clustering_for_shiny.Rd 1KB calculate_csi.Rd 644B DE_Seurat.Rd 2KB calc_csi_module_activity.Rd 545B plot_csi_modules.Rd 660B binarize_regulons_nextflow.Rd 1KB summarize_cell_types.Rd 1KB export_seurat_to_shiny_scCluster.Rd 1KB auc_thresh_kmeans.Rd 920B impute_seurat_MAGIC.Rd 704B calculate_rrs.Rd 854B extract_data_for_shiny_clustering.Rd 2KB plot_rrs_ranking.Rd 1KB export_data_from_seurat.Rd 839B README.md 621B example_data regulonAUC_subset.Rds 2.24MB metadata_sub.Rds 63KB scFunctions.Rproj 386B Tutorials process_SCENICprotocol.Rmd 677B Rplot001.jpeg 72KB process_SCENIC.md 28KB
process_SCENICprotocol.html 615KB process_SCENIC_files figure-gfm 
unnamed-chunk-19-1.png 12KB unnamed-chunk-17-1.png 113KB unnamed-chunk-20-1.png 45KB unnamed-chunk-22-1.png 17KB unnamed-chunk-12-1.png 21KB unnamed-chunk-15-1.png 3KB unnamed-chunk-13-1.png 53KB unnamed-chunk-21-1.png 17KB figure-markdown_strict unnamed-chunk-19-1.png 12KB unnamed-chunk-17-1.png 113KB unnamed-chunk-20-1.png 44KB unnamed-chunk-12-1.png 20KB unnamed-chunk-15-1.png 112KB unnamed-chunk-13-1.png 53KB unnamed-chunk-21-1.png 18KB process_SCENIC.Rmd 16KB DESCRIPTION 686B资源评论
