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pybel::hot_pepper:Python中的一种生态系统,可与生物表达语言(BEL)一起使用
共678个文件
py:261个
sif:159个
att:159个
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2021-05-14
12:51:59
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派贝尔 是一个纯Python软件包,用于解析和处理以(BEL)编码的生物网络。 它有助于在 ,Node-Link JSON, ,CSV,SIF, , , 和等数据格式之间进行数据交换; 数据库系统,如SQL和 ; 以及 , 和BEL Commons等网络服务。 它还为HiPathia , Drug2ways和SPIA等分析工具提供出口; 机器学习工具,例如PyKEEN和OpenBioLink ; 和别的。 其配套软件包PyBEL Tools包含用于分析最终生物网络的一组功能和管道。 我们意识到,我们与化学格式软件包OpenBabel的python包装器存在名称冲突。 如果您正在寻找他们的python包装器,请参见此处。 引文 如果您发现PyBEL对您的工作有用,请考虑引用: [1] 霍伊特,CT,等。 (2017)。 PyBEL:生物表达语言的计算框架。 生物信息学,3
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pybel::hot_pepper:Python中的一种生态系统,可与生物表达语言(BEL)一起使用 (678个子文件)
BEL Framework Small Corpus Document.att 45KB
Amyloidogenic subgraph.att 17KB
COVID-19 Knowledge Graph.att 16KB
Growth Factor-2.0-Hs.att 12KB
Tau protein subgraph.att 11KB
Apoptosis-2.0-Hs.att 10KB
Insulin signal transduction.att 10KB
Non-amyloidogenic subgraph.att 9KB
Neutrophil Signaling-2.0-Hs.att 9KB
Response to DNA Damage-2.0-Hs.att 9KB
Regulation of actin cytoskeleton subgraph.att 9KB
Oxidative Stress-2.0-Hs.att 9KB
Epithelial Innate Immune Activation-2.0-Hs.att 8KB
Angiogenesis-2.0-Hs.att 8KB
Macrophage Signaling-2.0-Hs.att 8KB
Megakaryocyte Differentiation-2.0-Hs.att 7KB
Gamma secretase subgraph.att 7KB
Fibrosis-2.0-Hs.att 7KB
Tumor necrosis factor subgraph.att 7KB
Endothelial Innate Immune Activation-2.0-Hs.att 7KB
MAPK-ERK subgraph.att 7KB
GSK3 subgraph.att 7KB
Cell Cycle-2.0-Hs.att 7KB
Interleukin signaling subgraph.att 7KB
Immune Regulation of Tissue Repair-2.0-Hs.att 7KB
Dendritic Cell Signaling-2.0-Hs.att 7KB
Senescence-2.0-Hs.att 6KB
Nerve growth factor subgraph.att 6KB
Cyclin-CDK subgraph.att 6KB
Epithelial Mucus Hypersecretion-2.0-Hs.att 6KB
Wound Healing-2.0-Hs.att 6KB
HemeKG.att 5KB
MAPK-JNK subgraph.att 5KB
Low density lipoprotein subgraph.att 5KB
Caspase subgraph.att 5KB
Th1-Th2 Signaling-2.0-Hs.att 5KB
Phosphatidylinositol 3 subgraph.att 5KB
Beta secretase subgraph.att 5KB
Cell Interaction-2.0-Hs.att 4KB
NFE2L2 Signaling-2.0-Hs.att 4KB
Inflammatory response subgraph.att 4KB
Glutamatergic subgraph.att 3KB
Th17 Signaling-2.0-Hs.att 3KB
Matrix metalloproteinase subgraph.att 3KB
Nuclear factor Kappa beta subgraph.att 3KB
Autophagy-2.0-Hs.att 3KB
Treg Signaling-2.0-Hs.att 3KB
Wnt-2.0-Hs.att 3KB
Hypoxic Stress-2.0-Hs.att 3KB
Akt subgraph.att 3KB
Endoplasmic Reticulum Stress-2.0-Hs.att 3KB
Ubiquitin degradation subgraph.att 3KB
B-cell Signaling-2.0-Hs.att 3KB
Jak Stat-2.0-Hs.att 3KB
Bcl-2 subgraph.att 3KB
Vascular endothelial growth factor subgraph.att 3KB
ECM Degradation-2.0-Hs.att 2KB
GABA subgraph.att 2KB
Chemokine signaling subgraph.att 2KB
Necroptosis-2.0-Hs.att 2KB
Clock-2.0-Hs.att 2KB
Axonal transport subgraph.att 2KB
Wnt signaling subgraph.att 2KB
Chaperone subgraph.att 2KB
NK Signaling-2.0-Hs.att 2KB
Tissue Damage-2.0-Hs.att 2KB
Apoptosis signaling subgraph.att 2KB
Acetylcholine signaling subgraph.att 2KB
APOE subgraph.att 2KB
Beta-Catenin subgraph.att 2KB
hsa04370.att 2KB
Endosomal lysosomal subgraph.att 2KB
Peroxisome proliferator activated receptor subgraph.att 2KB
Electron transport chain.att 2KB
ADAM Metallopeptidase subgraph.att 2KB
Xenobiotic Metabolism Response-2.0-Hs.att 2KB
Unfolded protein response subgraph.att 2KB
CREB subgraph.att 2KB
Reactive oxygen species subgraph.att 2KB
Interferon signaling subgraph.att 2KB
DYRK1A subgraph.att 2KB
Notch-2.0-Hs.att 2KB
mTor-2.0-Hs.att 2KB
Reelin signaling subgraph.att 2KB
Nuclear Receptors-2.0-Hs.att 2KB
Axonal guidance subgraph.att 2KB
Epigenetics-2.0-Hs.att 2KB
DKK1 subgraph.att 2KB
JAK-STAT signaling subgraph.att 2KB
Mapk-2.0-Hs.att 2KB
Hedgehog-2.0-Hs.att 2KB
Toll like receptor subgraph.att 2KB
Mast cell activation-2.0-Hs.att 2KB
Calcium-dependent signal transduction.att 1KB
Cytotoxic T-cell Signaling-2.0-Hs.att 1KB
Notch signaling subgraph.att 1KB
Sphingolipid metabolic subgraph.att 1KB
Calpastatin-calpain subgraph.att 1KB
Osmotic Stress-2.0-Hs.att 1KB
Cholesterol metabolism subgraph.att 1KB
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