BDMM-Prime：针对BEAST 2的BDMM多类型出生/死亡模型的修改实现
需积分: 13 109 浏览量
2021-02-12
00:20:27
上传
评论
收藏 581KB ZIP 举报
BDMM-Prime：针对BEAST 2的BDMM多类型出生/死亡模型的修改实现 （111个子文件） 
COPYING 34KB Dockerfile 161B .gitignore 357B .gitignore 85B
commons-lang3-3.4.jar 424KB BirthDeathMigrationLikelihoodTest.java 87KB BirthDeathMigrationDistribution.java 41KB TypeMappedTree.java 30KB TrajectorySamplerTest.java 24KB TypeMappedTreeTest.java 23KB TimedParameterInputEditor.java 19KB SkylineInputEditor.java 13KB SampledTrajectory.java 13KB Parameterization.java 12KB SmallNumber.java 12KB SimulatedTree.java 12KB Particle.java 11KB TypeTraitSetInputEditor.java 9KB TimedParameter.java 8KB P0GeState.java 8KB EpochVisualizerPanel.java 8KB EpiParameterization.java 7KB FBDParameterization.java 7KB SkylineMatrixParameter.java 6KB SkylineParameter.java 6KB ReplacementSampler.java 5KB CanonicalParameterization.java 5KB P0GeSystem.java 5KB SkylineVectorParameter.java 5KB ParameterizationTest.java 5KB Trajectory.java 5KB ObservedSamplingEvent.java 5KB SkylineVectorValuesTableModel.java 4KB SkylineMatrixValuesTableModel.java 4KB SmartScaleOperator.java 4KB SkylineMatrixInputEditor.java 4KB SmallNumberTest.java 4KB TypeSet.java 4KB MultivariateLogNormal.java 4KB TypedTreeStatsLogger.java 4KB ODESystem.java 3KB Utils.java 3KB TypedNodeTreeLogger.java 3KB CrossBirthEvent.java 3KB P0System.java 3KB BinomialDistribution.java 3KB SamplingEvent.java 3KB SkylineVectorInputEditor.java 2KB OUSkyGridPrior.java 2KB TypeChangeEvent.java 2KB SkyGridPrior.java 2KB SmartZeroExcludingPrior.java 2KB MigrationEvent.java 2KB CoalescenceEvent.java 2KB Slice.java 2KB TrajectoryEvent.java 2KB BirthEvent.java 2KB NodeAgeLogger.java 2KB ChangeTimeScaler.java 2KB UntypedTreeFromTypedTree.java 2KB ZeroExcludingPrior.java 2KB RootProbLogger.java 1KB OptionalLogger.java 1KB NodeFactory.java 1KB DeathEvent.java 1KB TipDatesFromTree.java 1KB InitializedTraitSet.java 1KB ScaledNumbers.java 1KB SimulatedTrajectoryLogger.java 1KB SkylineValuesTableModel.java 971B ObservedEvent.java 864B ParameterizationInputEditor.java 854B TreeProbEstimateLogger.java 844B ObservationEndEvent.java 740B P0State.java 663B validation.md 7KB README.md 3KB compare.org 1KB traj_distrib_compare.R 5KB traj_distrib_compare.R 5KB trajProcessing.R 3KB traj_simulator.R 2KB traj_simulator.R 2KB mttree_prob.R 2KB validation.Rmd 10KB validation.Rmd 2KB LICENSE.xchart 11KB BDMMPrimeParameterizations.xml 22KB BDMMPrime.xml 16KB build.xml 12KB traj_inference_1type_rhoSA.xml 3KB traj_inference_1type_rho.xml 3KB traj_inference_2types_rhoSA.xml 3KB typesOnly_MCMC.xml 3KB traj_inference_1type_SA.xml 3KB traj_inference_1type.xml 3KB traj_inference_2types.xml 3KB tree_prior_estimates.xml 3KB typesOnly_mapping.xml 3KB traj_and_tree_simulator_2types_rhoSA.xml 3KB共 111 条
- 1
- 2
资源评论
