tumorcomparer
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2021-05-16
07:32:58
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tumorcomparer （116个子文件） 
Weighted_similarity_own_measure_quicker.bak 20KB run_comparison.bak 12KB generate_composite_mat_and_gene_weights.bak 8KB categorize_cell_lines.bak 8KB plot_mds.bak 6KB generics.bak 1KB shiny-server.conf 679B r-requirements.dcf 501B r-requirements.dcf 330B DESCRIPTION 1003B Dockerfile 665B Dockerfile 358B .gitignore 366B .Rapp.history 0B
tumor_comparer_example.nb.html 1.03MB about.html 621KB google-analytics.js 377B tumorcomparer.json 99B LICENSE.md 10KB about.md 6KB README.md 1KB README.md 566B NAMESPACE 2KB run_comparison.R 14KB server.R 11KB test_tumorcomparer.R 9KB generate_composite_mat_and_gene_weights.R 9KB categorize_cell_lines.R 8KB prepare_maf_mutations.R 8KB Read_in_and_prepare.R 7KB installPackages.R 6KB plot_mds.R 6KB Run_tumorcomparer_for_multiple_cancer_types_quantile_normalized.R 6KB global.R 6KB make_balloon_plot_data_from_comparison_result.R 5KB Run_tumorcomparer_for_multiple_cancer_types.R 5KB prepare_cosmic_81_mutations.R 5KB Run_tumorcomparer_for_multiple_cancer_types_cont_exp.R 5KB plot_joyplot.R 4KB make_balloon_plot_data_from_mtc.R 4KB ui.R 3KB map_mean_similarity_to_gradient.R 3KB create_binary_mutation_matrix.R 3KB RunTumorComparerExample_updated.R 2KB RunTumorComparerExample_updated_cont_exp.R 2KB postprocessing_results.R 2KB plot_balloon_plot.R 2KB prepare_gene_sets.R 1KB prepare_cosmic_data.R 1KB pair_dist.R 987B keep_only_high_level_cnas.R 875B calc_weighted_corr.R 851B tic_toc.R 748B compute_freq_alt.R 646B misc_functions.R 572B return_first_part.R 551B run_shiny_app.R 327B installPackage.R 309B convert_to_0_to_1_using_xminusmin_by_maxminusmin.R 304B data.R 266B testthat.R 70B .Rbuildignore 154B run_comparison.Rd 6KB generate_composite_mat_and_gene_weights.Rd 3KB make_balloon_plot_data_from_mtc.Rd 3KB plot_mds.Rd 2KB map_mean_similarity_to_gradient.Rd 2KB categorize_cell_lines.Rd 2KB make_balloon_plot_data_from_comparison_result.Rd 1KB pair_dist.Rd 936B plot_balloon_plot.Rd 890B keep_only_high_level_cnas.Rd 889B compute_freq_alt.Rd 728B calc_weighted_corr.Rd 704B return_first_part.Rd 704B plot_joyplot.Rd 680B convert_to_0_to_1_using_xminusmin_by_maxminusmin.Rd 501B tic.Rd 475B tcga_pancan_pathway_genes.Rd 470B run_shiny_app.Rd 390B toc.Rd 269B tcga_pancan_pathway_genes.rda 1KB ov_comparison_result.rds 7.82MB ov_composite_mat.rds 167KB mtc_results_20200331_no_factors.rds 55KB mtc_results_20200331.rds 55KB tumor_comparer_example.Rmd 6KB TumorComparer.Rproj 343B tumorcomparer.sh 307B
tumor_exp.txt 10.02MB tumor_exp.txt 4.65MB tumor_cna.txt 1.77MB tumor_cna.txt 759KB Genes_and_weights_exp.txt 508KB genes_and_weights_exp.txt 484KB tumor_mut.txt 245KB cell_line_exp.txt 224KB cell_line_exp.txt 160KB tumor_mut.txt 85KB cell_line_cna.txt 71KB共 116 条
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