OpenDBA：GPU加速的动态时间扭曲（DTW）重心平均
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2021-02-27
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OpenDBA-master.zip （94个子文件） 
OpenDBA-master 
getopt.h 4KB openDBA.sh 115B
direct_rna_leader_float.txt 32KB docs 
rhinoA_dtw_2_signals_one_with_more_info_open_end_data_ignored_closeup.png 32KB rhinoA_3_samples_global_scaling.png 1.91MB rhinoA_two_sample_dtw.png 767KB rhinoA_2_pass_segmentation.png 892KB opendba_mem_algo.png 110KB rhinoA_3seq_raw_signal_dba.png 149KB rhinoA_dtw_2_signals_one_with_more_info_but_open_end_data_not_ignored.png 766KB multithreading.cpp 4KB opendba.yml 703B tests wrong_files wrong_test.fna.idx 233B wrong.bed 299B fast5 ohno.fast5 13KB oops.fast5 70B wrong.bin 1KB wrong_test.fast5 0B wrong_test.fna 334B wrong.txt 27B good_files text random_distances_colinear.txt 169B test2 random_large1.txt 39KB random_short3.txt 191B random_trun_short2.txt 80B random_short1.txt 172B random_short2.txt 175B random_large0.txt 39KB dtw_l2_norm_query.txt 40B good.txt 2KB random_distances_non_colinear.txt 8KB read_9236c56d-7768-42ad-9db1-cc2d5b24de2a_query_good.txt 311KB dtw_l2_norm_subject.txt 40B test1 simple3_test.txt 1KB simple4_test.txt 1KB random_test1.txt 4KB seq2_test.txt 4KB seq1_test.txt 4KB output_results_znorm.txt 4KB seq2_test_znorm.txt 4KB simple2_test.txt 1KB output_results.txt 4KB seq1_test_znorm.txt 4KB output_results_simple.txt 1KB random_test2.txt 4KB random_output.txt 4KB simple1_test.txt 1KB fast5 MSI_20180314_FAH40082_MN24809_sequencing_run_mt237_3_brdu_mcginty_54076_read_229_ch_222_strand.fast5 45KB MSI_20180314_FAH40082_MN24809_sequencing_run_mt237_3_brdu_mcginty_54076_read_664_ch_195_strand.fast5 215KB MSI_20180314_FAH40082_MN24809_sequencing_run_mt237_3_brdu_mcginty_54076_read_352_ch_156_strand.fast5 148KB MSI_20180314_FAH40082_MN24809_sequencing_run_mt237_3_brdu_mcginty_54076_read_519_ch_85_strand.fast5 136KB MSI_20180314_FAH40082_MN24809_sequencing_run_mt237_3_brdu_mcginty_54076_read_493_ch_223_strand.fast5 232KB good.bed 79B fasta fasta_test.hsh 17.89MB fasta_test.idx 40B fna output1.fna 351B prefix_test_unique.fna 96B good_output.fna 331B good_file.fna 135B prefix_test.fna 146B output.fna 351B fasta_test.hst 0B fasta_test.hpr 17.89MB fasta_test.hsi 154KB fasta_test.hpf 17.89MB binary coxsackie_a16_3prime.fna.bin0 2KB test_utils.cuh 525B empty_files empty.bed 0B empty_test.fna.idx 0B empty.txt 0B empty_ish_test.fna 12B empty_test.fast5 0B binary.bin 0B empty_test.fna 0B openDBA_test.cu 12KB Makefile 2KB catch.hpp 508KB multithreading.h 2KB LICENSE 35KB segmentation.hpp 35KB cpu_utils.hpp 19KB openDBA.cuh 5KB fast5_segmenter.jl 18KB gpu_utils.hpp 9KB .gitignore 204B dtw.hpp 13KB io_utils.hpp 6KB Makefile 2KB limits.hpp 2KB README.md 13KB cuda_utils.hpp 1KB exit_codes.hpp 670B fastcluster.cpp 50KB openDBA.cu 4KB dba.hpp 50KB资源评论
