RENET2:RENET2
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2021-03-20
10:14:15
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RENET2-main.zip （74个子文件） 
RENET2-main 
.gitignore 275B README.md 14KB test test_download_pmcid_list.csv 231B test_download_pmid_list.csv 1KB renet2 evaluate_renet2_ft.py 17KB stat_covid.ipynb 173KB pre_process preparing_ft_data.ipynb 92KB normalize_ann.py 4KB exp_ft.ipynb 685KB utils sequence_utils.py 18KB omim2mesh.py 409B mesh_match.py 356B ann_utils.py 9KB data_iterator.py 8KB __init__.py 0B word_index 2.16MB venn.py 21KB gene_transfer.py 346B tokenizer.py 6KB evaluate_renet2_ft_cv.py 35KB parse_data.py 26KB train_renet2_ft.py 34KB download_renet2_data.sh 1KB build_best_model_abs.ipynb 361KB clean_label.ipynb 113KB download_renet2_data_bal.sh 1KB model.py 42KB predict_renet2_ft.py 18KB __init__.py 0B parse_COVID_data.ipynb 27KB raw_handler.py 27KB resource 
dict_omim2mesh.txt 178KB human_genes.txt 306KB dict_gene.txt 4.48MB dict_c2d.txt 9.15MB exp_abs.ipynb 323KB vis_text.ipynb 535KB raw.py 61KB train_renet2_ft_cv.py 34KB download_data.py 6KB models ft_models .gitkeep 0B .gitkeep 0B abs_models .gitkeep 0B benchmark Generate_BioBERT_Input.ipynb 22KB BeFree README.md 509B benchmark_befree.sh 4KB calculate_metrics.py 2KB check.tsv 8KB Generate_BeFree_Input.ipynb 9KB BioBERT re_eval.py 2KB run_bert.sh 977B calculate_metrics.py 3KB run_bert_e.sh 344B DTMiner README.md 279B benchmark_DTMiner.sh 59B calculate_metrics.py 2KB Generate_DTMiner_Input.ipynb 8KB LICENSE.md 1KB tools 
geniass-1.00.tar.gz 148KB data ft_info ft_id_lst.csv 10KB classification_result_befree.txt 81KB classification_result_dtminer.txt 98KB classification_result_biobert.txt 100KB ft_500_n.tsv 371KB abs_data .gitkeep 0B raw_data ft .gitkeep 0B abs .gitkeep 0B image 
RENET2_vis.png 59KB RENET2_logo.png 53KB ft_data .gitkeep 0B test_data .gitkeep 0B ft_gda .gitkeep 0B ann_table ann_1st.tsv 484KB ann_2nd.tsv 324KB资源评论
