DENR:使用PRO-seq选择最活跃的转录成绩单模型
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2021-03-19
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DENR:使用PRO-seq选择最活跃的转录成绩单模型 （128个子文件） 
test_single_strand.bw 85KB test_double_strands_plus.bw 69KB test_double_strand_plus.bw 69KB test_double_strands_minus.bw 61KB test_double_strand_minus.bw 61KB test_multichrom.bw 31KB test_transcript_filter_301_500.bw 31KB test_transcript_filter_1_1000.bw 31KB test_upr_minus.bw 18KB test_upr_plus.bw 18KB DESCRIPTION 2KB .gitignore 689B .gitignore 11B conv_onelayer_61aa9200.hdf5 123KB hsapiens_gene_ensembl_96_txdb_test 64KB README.md 6KB NAMESPACE 1KB
transcript_model_creation.png 92KB optimization.png 30KB upstream_polymerase_ratio.png 16KB transcript_shape_profile-class.R 31KB tq_visualization.R 19KB tss_predictor.R 18KB transcript_models_build_helpers.R 15KB test-transcript_model.R 15KB txdb_handling.R 13KB data_handling.R 12KB transcript_quantifier-class.R 12KB model_fitting.R 10KB model_fit_statistics.R 6KB test-shape_profile.R 6KB test-process_data.R 6KB test-tss_prediction.R 6KB test-plotting.R 5KB make_test_files_two_strands.R 5KB abundance_tables.R 5KB test-reduce_transcript_model.R 4KB make_test_files_single_strand.R 4KB upstream_density_ratio.R 4KB test_transcript_filter.R 3KB test-model_fitting.R 3KB setup-model_fitting.R 2KB type_checkers.R 2KB make_density_ratio_bw.R 2KB test-caching.R 1KB test-linting.R 1KB test-type_checkers.R 1019B make_multichrom_bw.R 843B setup-linting.R 477B teardown-caching.R 200B zzz.R 163B testthat.R 66B .Rbuildignore 97B show-transcript_quantifier-method.Rd 3KB transcript_shape_profile.Rd 2KB transcript_quantifier-class.Rd 2KB transcript_quantifier.Rd 2KB transcript_shape_profile-class.Rd 2KB fit.Rd 2KB rescale_fixed_width_position.Rd 2KB summarize_bigwig.Rd 1KB collect_tss_features.Rd 1KB plot_model.Rd 1KB transcript_abundance.Rd 1KB upstream_polymerase_ratio.Rd 1KB model_agreement.Rd 1KB labeled_feature_set.Rd 1KB create_model_masks.Rd 1KB label_transcripts.Rd 1KB window_regions.Rd 1KB locus_variance_explained.Rd 1KB tx_variance_explained.Rd 1KB seqv.Rd 1KB get_data.Rd 1023B get_transcripts.Rd 947B reduce_transcript_models.Rd 928B create_transcript_models.Rd 890B apply_shape_profile.Rd 868B cache_create_dir.Rd 864B cache_set_dir.Rd 863B download_txdb.Rd 858B predict_inactive_transcripts.Rd 858B save_txdb.Rd 854B group_transcripts.Rd 845B tss_predictor.Rd 813B apply_bigwig_seqinfo.Rd 806B locus_statistics.Rd 781B create_bins.Rd 735B view.Rd 726B add_data.Rd 718B view_available_txdb.Rd 717B gene_abundance.Rd 710B get_abundance.Rd 649B get_transcribed_regions.Rd 632B sum_squares_grad.Rd 596B sum_squares_lasso.Rd 583B strip_loess.Rd 578B predict_transcripts.Rd 523B mask_transcripts.Rd 510B group_trancript_models.Rd 503B共 128 条
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