SIEVE-Ub:用于预测 E3 泛素连接酶模拟物的 SIEVE-Ub 预测算法的代码和数据
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2021-05-29
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SIEVE-Ub-master.zip （57个子文件） 
SIEVE-Ub-master 
SIEVEUbApply.R 1KB
LICENSE.txt 1KB SIEVEUb.R 13KB make_prediction.csh 480B KmerSweepCode.Rmd 7KB README.md 5KB Util Options.py 6KB Parser.py 919B __init__.py 95B fasta_chunker.py 2KB SIEVEInit.py 6KB FeatureImportanceMapping.Rmd 3KB data PATRIC.genomes 7KB ubligase_examples_ids_minimal_model_10features.tab 33KB FamiliesConservative.txt 51KB ubligase_examples_ids.fasta 216KB kmertrain_red3_sweep 233B
ubligase_examples_ids_minimal_model_10features.html 242KB kmertrain_red0_sweep 232B kmertrain_red1_sweep 233B kmertrain_red4_sweep 231B
patric_ubligase_predictions_best_model.txt.gz 11.24MB red0 ubligase_k4.red0.train 21KB ubligase_k13.red0.train 4.16MB ubligase_k16.red0.train 4.62MB ubligase_k11.red0.train 1.63MB ubligase_k15.red0.train 5.27MB ubligase_k12.red0.train 2.84MB make_files.bash 212B ubligase_k8.red0.train 215KB ubligase_k14.red0.train 5.15MB ubligase_k18.red0.train 2.71MB ubligase_k9.red0.train 423KB ubligase_k20.red0.train 1.8MB ubligase_k6.red0.train 62KB ubligase_k5.red0.train 36KB ubligase_k19.red0.train 2.14MB ubligase_k7.red0.train 113KB ubligase_k3.red0.train 13KB ubligase_k10.red0.train 843KB ubligase_k17.red0.train 3.57MB legionella_examples.fasta 383B best_model_1280features.txt 17KB 273123.10.PATRIC.faa 1.99MB uniprot_search.readme 190B SIEVEUb_minimal_model.Rdata 6KB rnd0.tgz 1.61MB minimal_model_1000features.txt 15KB SIEVEUb_min1000_model.Rdata 96KB ubex_k14red0_counts.txt 551KB PATRIC_secretion_systems.txt 9KB legionella_examples_k14red0_minimal10.txt 305B SIEVEUb_best_model.Rdata 103KB minimal_model_10features.txt 303B kmertrain_red2_sweep 234B KmerFeatures.py 23KB SIEVEUbCode.Rmd 19KB资源评论
