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Apis-Laboriosa-Project
共81个文件
nwk:6个
sh:5个
ctl:3个
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2021-03-19
10:54:51
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质量控制 基因组组装 # Run SOAPdenovo ./soapdenovo all -s config_file config_file设置如下: # maximal read length max_rd_len=150 # average insert size avg_ins=350 # if sequence needs to be reversed reverse_seq=0 # in which part(s) the reads are used asm_flags=3 # cutoff of pair number for a reliable connection (default 3) pair_num_cutoff=3 # minimum aligned length to contigs for a reliable read location (de
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Apis-Laboriosa-Project-main.zip (81个子文件)
Apis-Laboriosa-Project-main
A demo for Treerecs
1.treerecs_out
1.gene_family.recphylo.xml 4KB
1.gene_family.nwk 434B
speices_tree_rooted.newick.nwk 102B
1.gene_family.unroot.newick 230B
command.sh 126B
A demo for RANGERDTL v2.0
AggregateOutput1.txt 2KB
1.gene_family.newick 336B
speices_tree_rooted.newick.nwk 102B
1.gene_family.opt.newick.txt 233B
1.gene_family.unroot.newick 230B
OutputFiles1
rangerOutput36 2KB
rangerOutput46 2KB
rangerOutput49 2KB
rangerOutput28 2KB
rangerOutput2 2KB
rangerOutput23 2KB
rangerOutput19 2KB
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rangerOutput20 2KB
rangerOutput21 2KB
rangerOutput8 2KB
rangerOutput15 2KB
rangerOutput27 2KB
rangerOutput32 2KB
rangerOutput12 2KB
rangerOutput43 2KB
rangerOutput24 2KB
rangerOutput10 2KB
rangerOutput47 2KB
rangerOutput29 2KB
rangerOutput17 2KB
rangerOutput44 2KB
rangerOutput37 2KB
rangerOutput13 2KB
rangerOutput1 2KB
rangerOutput7 2KB
rangerOutput41 2KB
rangerOutput9 2KB
rangerOutput25 2KB
rangerOutput48 2KB
rangerOutput14 2KB
rangerOutput26 2KB
rangerOutput35 2KB
rangerOutput4 2KB
rangerOutput18 2KB
rangerOutput3 2KB
rangerOutput39 2KB
rangerOutput42 2KB
rangerOutput45 2KB
rangerOutput38 2KB
rangerOutput22 2KB
rangerOutput11 2KB
rangerOutput30 2KB
rangerOutput50 2KB
rangerOutput31 2KB
rangerOutput34 2KB
rangerOutput5 2KB
rangerOutput40 2KB
command.sh 498B
count_all_gene_families.py 7KB
A demo for PAML free-ratio model
1.conserved_gene_family.nwk 109B
1.conserved_gene_family.free_ratio_branch.ctl 2KB
1.conserved_gene_family.fasta 13KB
command.sh 82B
1.conserved_gene_family.free_ratio.mlc 49KB
calculate_genetic_distance.r 2KB
A demo for PAML branch-site model
1.conserved_gene_family.null.mlc 47KB
1.conserved_gene_family.nwk 113B
1.conserved_gene_family.branch_site_null.ctl 2KB
1.conserved_gene_family.fasta 13KB
1.conserved_gene_family.alternative.mlc 48KB
1.conserved_gene_family.branch_site_alternative.ctl 2KB
command.sh 151B
README.md 20KB
A demo for BUSTED model
1.conserved_gene_family.nwk 122B
1.conserved_gene_family.hyphy.json 43KB
1.conserved_gene_family.hyphy.log 5KB
1.conserved_gene_family.fasta 13KB
command.sh 161B
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