analysing_STRs:提取来自STR的分析脚本 （163个子文件） 
.gitignore 540B README.md 93B creating_diagnostic_4_subtables_to_fill_Table2.R 60KB creating_diagnostic_4_subtables.R 38KB filling_in_numbers_Table2_paperVal.R 25KB enriching_clinical_data_research_cohort_merging_all_versions_from_RE.R 24KB computing_probands_not_neuro_from_case-controls.R 19KB completing_validation_golden_table_EHv3.1.2.R 18KB completing_validation_golden_table_EHv2.5.5.R 18KB plotting_bubble_plot_PCR_vs_visual_inspection.R 17KB merging_googleDrive_raw_tables.R 16KB analysing_HTT_effect_population_EHv2.5.5.R 15KB generating_cases_controls_table_per_locus_EHv2.5.5.R 15KB generating_cases_controls_table_per_locus_EHv3.1.2.R 14KB analysing_HTT_effect_population_EHv3.1.2.R 14KB generating_cases_controls_table_EHv3.2.2_13loci_90863genomes.R 14KB numbers_for_table2.R 14KB plotting_population_and_STR_distribution.R 14KB plotting_STR_allele_frequency_EH_research.R 13KB plotting_bubble_plot_PCR_vs_visual_inspection_genQA.R 13KB analyse_population_pathogenic_tail_loci_EHv255.R 12KB selecting_table_disease_platekeys_paper.R 12KB selecting_genomes_to_run_EH.R 12KB plotting_population_and_STR_distribution_unrelated_38K.R 12KB plotting_bubble_plot_EHv2.5.5.R 11KB analyse_population_pathogenic_tail_loci.R 11KB merging_RE_versions.R 11KB completing_validation_golden_table_from_allTogether_EHv3.1.2.R 11KB computing_carrier_ratio_across_13loci.R 10KB enriching_clinical_data_research_cohort.R 10KB merging_main_and_pilot.R 10KB deduplicating_clinically_enriched_tables_EHv3.1.2_AR.R 9KB plotting_STR_allele_frequency_EH_b38.R 9KB haplotyping_AR.R 9KB deduplicating_clinically_enriched_tables_EHv2.5.5_AR.R 9KB plotting_STR_allele_frequency_EH_b37.R 9KB enrich_merged_with_RE_sept2019.R 9KB enrich_merged_with_RE_nov2019_EHv3.1.2.R 9KB plot_together_histo_boxplot.R 9KB comparing_pg_aj_trios.R 9KB defining_cases_controls_PAT_FC.R 8KB defining_cases_controls_PAC_FC.R 8KB plotting_bubble_plot_EHv3.1.2.R 8KB defining_cases_controls_PAT.R 8KB analysing_NIH_loci_batch_august2020.R 7KB analysing_SHARP_loci_batch_august2020.R 7KB computing_stat_signif_across_ancestries_unrelated_RD_cancer_random400.R 7KB analysing_zhongbo_HipSTR_loci_batch_december2020.R 7KB haplotyping_HTT.R 7KB plotting_NOTCH2_paper_from_EHv2.R 7KB deduplicating_clinically_enriched_tables_EHv2.5.5_HTT.R 7KB deduplicating_clinically_enriched_tables.R 7KB deduplicating_clinically_enriched_tables_EHv3.1.2_HTT.R 7KB plotting_expanded_genomes_batch_march_2020.R 7KB plotting_NOTCH2_paper.R 7KB plotting_population_and_STR_distribution_unrelated_proband_or_cancer_1000_random.R 7KB defining_cases_controls_PAC.R 7KB selecting_neuro_family_members.R 7KB plotting_PC_vs_disease_STR_size_across_populations.R 7KB analyse_population_pathogenic_tail_loci_1Kg.R 7KB computing_stat_signif_across_ancestries_unrelated_RD_cancer.R 6KB creating_catalog_clinical_file_V10.R 6KB creating_catalog_clinical_file_V11.R 6KB transforming_genomeRow_to_alleleRow.R 6KB computing_stat_signif_across_ancestries_forensics.R 6KB formatting_Arianna_PCR_fishing_table.R 6KB plotting_carriers_beyond_patho.R 6KB enriching_validation_golden_table_with_population.R 6KB settingUp_dragen_runs.R 6KB enriching_clinical_data_pilot_cohort.R 6KB merging_popu_batch1_batch2_all_and_unique.R 6KB reproducing_results_table1.R 6KB generating_boxplots_with_stats_for_Ari.R 6KB computing_cumulative_density_function.R 6KB plotting_bubble_plot_PCR_vs_EH_performance_dataset.R 6KB plotting_bubble_plot_GEL_val_data_EHv2.5.5_VS_EHv3.1.2.R 6KB transforming_tables_by_genomes_to_alleles.R 6KB 1Kg_plotting_population_and_STR_distribution.R 6KB selecting_genomes_RE_V8.R 5KB selecting_genomes_both_b37_b38_assemblies.R 5KB plotting_population_and_STR_distribution_unrelated_proband_or_cancer.R 5KB analysing_AR_across_EUR_1Kg.R 5KB creating_catalog_clinical_file_V8.R 5KB analysing_variants_FXN_monoallelic_expansions.R 5KB creating_catalog_clinical_file_V9.R 5KB creating_catalog_clinical_file_V7.R 5KB creating_catalog_clinical_file_V6.R 5KB creating_catalog_clinical_file_V5.R 5KB plotting_bubble_plot_PCR_vs_visual_inspection.R 5KB plotting_heatmap_disease_loci.R 5KB plotting_heatmap_forensics_loci.R 5KB analyse_population_pathogenic_tail_loci_gnomAD.R 5KB number_genomes_per_project.R 5KB creating_subpopulabel_INP_file.R 5KB creating_catalog_clinical_file_V4.R 4KB studying_participants_within_population.R 4KB analysing_AR_effect_population_EHv3.1.2.R 4KB analysing_AR_effect_population_EHv2.5.5.R 4KB plotting_bubble_plot_per_superpopu.R 4KB analysing_AR_across_1Kg.R 4KB共 163 条
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