core:生物信息学核心活动的通用代码
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2021-05-06
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core:生物信息学核心活动的通用代码 （107个子文件） 
cohort.config 1KB case.config 1KB gatk.config 754B nextflow.config 565B nextflow.config 361B scRNA.config 205B nf-singularity.config 200B humann2_nextflow.config 169B umi_nextflow.config 28B nextflow.config 28B nextflow.config 27B nextflow.config 27B nextflow.config 27B nextflow.config 27B nextflow.config 27B nibsc_report.css 423B scRNA.def 2KB scRNA_image.def 2KB biobakery_singularity.def 2KB basic_image.def 775B
analyse_filtered.html 3.76MB analyse_unfiltered.html 3.13MB aggregate_example.html 616KB muscle_alignment.job 1KB salmon_index.job 740B submit_umi_nextflow.job 540B submit_humann_analysis.job 462B run_nextflow_scRNA.job 457B resume_nextflow_humann2.job 441B run_nextflow_humann2.job 431B submit_nextflow_qc.job 373B impulse.job 288B README.md 3KB README.md 3KB README.md 3KB README.md 3KB README.md 2KB README.md 2KB README.md 2KB README.md 1KB README.md 1KB README.md 584B GATK_CNV_COHORT.nf 17KB gatk.nf 16KB GATK_CNV_CASE.nf 10KB build_pon.nf 9KB umi_preprocess.nf 8KB cutlo.nf 7KB scrna_short.nf 7KB influenza_classifier.nf 7KB example_workflow_singularity.nf 7KB nonunique.nf 7KB tophtseq.nf 7KB cutkraken.nf 6KB humann2_functional.nf 5KB cutloamplicon.nf 5KB cutcnv.nf 5KB cutloforward.nf 4KB initial-QC.nf 4KB general_qc.nf 4KB notrimlofreq.nf 4KB cutvelvet.nf 3KB cutoptimiser.nf 3KB trimonly.nf 2KB groupcall.nf 1KB test_fl_main.nf 1KB test_collect.nf 741B
schematic.png 106KB schematic.png 47KB schematic.png 25KB logger.py 4KB rnaseq-novo-part2.py 3KB rnaseq-novo-part1.py 2KB loopkraken.py 2KB rnaseq-novo-part3.py 2KB tablefromvcf.py 2KB crudefilter.py 1KB filtervcf.py 562B time_course_workflow.R 16KB time_course_workflow_single_condition.R 9KB useful_functions.R 4KB enrichment_hyper.R 2KB dotplotEnrichment.R 1KB impulse.R 1KB ena_custom_search.R 513B report_run_influenza-report.R 274B geneSymbols_coordinates_biomart.RDS 884KB analyse_filtered.Rmd 5KB analyse_unfiltered.Rmd 3KB report_loop_table.Rmd 1KB report_influenza_main.Rmd 1KB aggregate.Rmd 1KB markdown_notes_template.Rmd 1009B MSC_count.sh 3KB dobcl2fastq.sh 2KB doindex.sh 1KB dokraken.sh 883B nextwatcher.sh 619B runcutadapt.sh 551B runTrinity.sh 372B共 107 条
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