没有合适的资源?快使用搜索试试~ 我知道了~
metscale:大都会规模
共203个文件
gz:68个
md:22个
png:17个
需积分: 5 0 下载量 111 浏览量
2021-03-18
02:48:25
上传
评论
收藏 80.62MB ZIP 举报
温馨提示
MetScale:开源宏基因组学工作流程 这些开源宏基因组学工作流程旨在分析复杂环境样品的生物成分。预期的输入是端对端的Illumina FASTQ文件,当前的输出包括已过滤的读数,组合的重叠群,FastQC和QUAST结果的MultiQC报告,元基因组比较估计,分类学分类和功能预测。 入门 该项目的提供了有关安装和运行工作流程的有用说明。 先决条件 这些工作流已经过测试,可以在Linux操作系统(包括CentOS,Red Hat和Ubuntu)上脱机运行。 示例数据 工作流已使用来自该出版物的二次抽样数据集进行了测试: 最初的Shakya等。 2013数据集可作为在线。在我们的宏基因组学工作流程中,作为默认示例使用的二次抽样数据集可以在此处下载: 贡献 请阅读了解有关我们的行为准则以及如何为该项目做出贡献的详细信息。 执照 该软件已获得。 致谢 该项目以中开始的工作为。工作流中使用了各种
资源推荐
资源详情
资源评论
收起资源包目录
metscale:大都会规模 (203个子文件)
mtsv.cfg 6KB
expected.csv 88B
dbqt_config_doc 2KB
centos.def 1KB
ubuntu.def 1KB
DEPENDENCY_LICENSES 10KB
docker file 265B
Dockerfile 2KB
Dockerfile 670B
Dockerfile 524B
Dockerfile 481B
Dockerfile 481B
Dockerfile 421B
Dockerfile 417B
Dockerfile 383B
Dockerfile 286B
dockerSnakefile 16KB
dockerSnakefile 15KB
AMRVF1_PROKKA_DB.fasta 16.88MB
ResFinder.fasta 1.75MB
adapters_combined_256_unique.fasta 25KB
.gitignore 431B
containment_dict.json.gz 13.56MB
Paraburkholderia_xenovorans_LB400_GCF_000013645.1_ASM1364v1_genomic.fna.gz 2.69MB
Nostoc_sp_PCC_7120_GCF_000009705.1_ASM970v1_genomic.fna.gz 2.04MB
Rhodopirellula_baltica_SH_1_GCF_000196115.1_ASM19611v1_genomic.fna.gz 2MB
Herpetosiphon_aurantiacus_DSM_785_GCA_000018565.1_ASM1856v1_genomic.fna.gz 1.9MB
Bacteroides_thetaiotaomicron_VPI-5482_GCF_000011065.1_ASM1106v1_genomic.fna.gz 1.79MB
Methanosarcina_acetivorans_C2A_GCA_000007345.1_ASM734v1_genomic.fna.gz 1.62MB
Salinispora_arenicola_CNS-205_GCF_000018265.1_ASM1826v1_genomic.fna.gz 1.57MB
Shewanella_baltica_OS223_GCF_000021665.1_ASM2166v1_genomic.fna.gz 1.52MB
Shewanella_baltica_OS185_GCF_000017325.1_ASM1732v1_genomic.fna.gz 1.51MB
Chloroflexus_aurantiacus_J-10-fl_GCF_000018865.1_ASM1886v1_genomic.fna.gz 1.47MB
Bacteroides_vulgatus_ATCC_8482_GCF_000012825.1_ASM1282v1_genomic.fna.gz 1.46MB
Bordetella_bronchiseptica_253_GCF_000318015.1_ASM31801v1_genomic.fna.gz 1.42MB
Salinispora_tropica_CNB-440_GCF_000016425.1_ASM1642v1_genomic.fna.gz 1.4MB
Leptothrix_cholodnii_SP-6_GCF_000019785.1_ASM1978v1_genomic.fna.gz 1.31MB
Gemmatimonas_aurantiaca_T-27_GCF_000010305.1_ASM1030v1_genomic.fna.gz 1.28MB
Ruegeria_pomeroyi_DSS-3_GCF_000011965.2_ASM1196v2_genomic.fna.gz 1.27MB
Acidobacterium_capsulatum_ATCC_51196_GCF_000022565.1_ASM2256v1_genomic.fna.gz 1.16MB
Sulfitobacter_sp_NAS-14.1_GCF_000152645.1_ASM15264v1_genomic.fna.gz 1.12MB
Haloferax_volcanii_DS2_GCF_000025685.1_ASM2568v1_genomic.fna.gz 1.09MB
Geobacter_sulfurreducens_PCA_GCF_000007985.2_ASM798v2_genomic.fna.gz 1.07MB
Hungateiclostridium_thermocellum_ATCC_27405_GCF_000015865.1_ASM1586v1_genomic.fna.gz 1.07MB
Desulfovibrio_vulgaris_DP4_GCF_000015485.1_ASM1548v1_genomic.fna.gz 1.02MB
Sulfitobacter_sp_EE-36_GCF_000152605.1_ASM15260v1_genomic.fna.gz 1018KB
Enterococcus_faecalis_V583_GCF_000007785.1_ASM778v1_genomic.fna.gz 965KB
Deinococcus_radiodurans_R1_GCF_000008565.1_ASM856v1_genomic.fna.gz 923KB
GCF_000008565.1_ASM856v1_genomic.fna.gz 923KB
Chlorobium_phaeobacteroides_DSM_266_GCF_000015125.1_ASM1512v1_genomic.fna.gz 894KB
Pelodictyon_phaeoclathratiforme_BU-1_GCF_000020645.1_ASM2064v1_genomic.fna.gz 870KB
Caldicellulosiruptor_saccharolyticus_DSM_8903_GCF_000016545.1_ASM1654v1_genomic.fna.gz 838KB
Caldicellulosiruptor_bescii_DSM_6725_GCF_000022325.1_ASM2232v1_genomic.fna.gz 824KB
Nitrosomonas_europaea_ATCC_19718_GCF_000009145.1_ASM914v1_genomic.fna.gz 813KB
Treponema_denticola_ATCC_35405_GCF_000008185.1_ASM818v1_genomic.fna.gz 811KB
Chlorobium_limicola_DSM_245_GCF_000020465.1_ASM2046v1_genomic.fna.gz 794KB
Desulfovibrio_piger_GCF_900116045.1_DESPIGER_genomic.fna.gz 790KB
Sulfurisphaera_tokodaii_str_7_GCF_000011205.1_ASM1120v1_genomic.fna.gz 766KB
Akkermansia_muciniphila_ATCC_BAA-835_GCF_000020225.1_ASM2022v1_genomic.fna.gz 765KB
Porphyromonas_gingivalis_ATCC_33277_GCF_000010505.1_ASM1050v1_genomic.fna.gz 680KB
Thermoanaerobacter_pseudethanolicus_ATCC_33223_GCF_000019085.1_ASM1908v1_genomic.fna.gz 667KB
Pyrobaculum_aerophilum_str_IM2_GCF_000007225.1_ASM722v1_genomic.fna.gz 646KB
Archaeoglobus_fulgidus_DSM_4304_GCF_000008665.1_ASM866v1_genomic.fna.gz 631KB
Chlorobaculum_tepidum_TLS_GCF_000006985.1_ASM698v1_genomic.fna.gz 622KB
Zymomonas_mobilis_subsp_mobilis_ATCC_10988_GCF_000175255.2_ASM17525v2_genomic.fna.gz 620KB
Pyrobaculum_arsenaticum_DSM_13514_GCF_000016385.1_ASM1638v1_genomic.fna.gz 618KB
Wolinella_succinogenes_DSM_1740_GCF_000196135.1_ASM19613v1_genomic.fna.gz 605KB
Fusobacterium_nucleatum_subsp_nucleatum_ATCC_25586_GCF_000007325.1_ASM732v1_genomic.fna.gz 593KB
Pyrobaculum_calidifontis_JCM_11548_GCA_000015805.1_ASM1580v1_genomic.fna.gz 582KB
Chlorobium_phaeovibrioides_DSM_265_GCF_000016085.1_ASM1608v1_genomic.fna.gz 568KB
Thermus_thermophilus_HB8_GCF_000091545.1_ASM9154v1_genomic.fna.gz 568KB
Persephonella_marina_EX-H1_GCF_000021565.1_ASM2156v1_genomic.fna.gz 560KB
Pyrococcus_furiosus_DSM_3638_GCF_000007305.1_ASM730v1_genomic.fna.gz 551KB
Thermotoga_neapolitana_DSM_4359_GCF_000018945.1_ASM1894v1_genomic.fna.gz 543KB
Thermotoga_sp_RQ2_GCF_000019625.1_ASM1962v1_genomic.fna.gz 542KB
Thermotoga_petrophila_RKU-1_GCF_000016785.1_ASM1678v1_genomic.fna.gz 526KB
Dictyoglomus_turgidum_DSM_6724_GCF_000021645.1_ASM2164v1_genomic.fna.gz 522KB
Sulfurihydrogenibium_sp_YO3AOP1_GCF_000020325.1_ASM2032v1_genomic.fna.gz 515KB
Methanococcus_maripaludis_C5_GCF_000016125.1_ASM1612v1_genomic.fna.gz 506KB
Pyrococcus_horikoshii_OT3_GCF_000011105.1_ASM1110v1_genomic.fna.gz 503KB
Methanopyrus_kandleri_AV19_GCA_000007185.1_ASM718v1_genomic.fna.gz 488KB
Methanocaldococcus_jannaschii_DSM_2661_GCF_000091665.1_ASM9166v1_genomic.fna.gz 485KB
Methanococcus_maripaludis_S2_GCF_000011585.1_ASM1158v1_genomic.fna.gz 468KB
Hydrogenobaculum_sp_Y04AAS1_GCF_000020785.1_ASM2078v1_genomic.fna.gz 441KB
Sulfurihydrogenibium_yellowstonense_SS-5_GCF_000173615.1_ASM17361v1_genomic.fna.gz 435KB
Aciduliprofundum_boonei_T469_GCF_000025665.1_ASM2566v1_genomic.fna.gz 428KB
Ignicoccus_hospitalis_KIN4I_GCF_000017945.1_ASM1794v1_genomic.fna.gz 375KB
podar_metaG_sub_10_megahit.log.gz 182KB
Nanoarchaeum_equitans_Kin4-M_GCA_000008085.1_ASM808v1_genomic.fna.gz 138KB
podar_metaG_sub_10_megahit.txt.gz 151B
Contig_annotation_comparison.ipynb 69KB
Contig_annotation_comparison.ipynb 69KB
illumina_custom_config.json 10KB
my_custom_config.json 10KB
my_custom_config_strict.json 10KB
offline_downloads.json 5KB
test_tax_classification_workflow.json 4KB
test_readfilt_online_workflow.json 790B
test_assembly_online_workflow.json 657B
test_tax_classification_online_workflow.json 354B
共 203 条
- 1
- 2
- 3
资源评论
基少成多
- 粉丝: 21
- 资源: 4538
上传资源 快速赚钱
- 我的内容管理 展开
- 我的资源 快来上传第一个资源
- 我的收益 登录查看自己的收益
- 我的积分 登录查看自己的积分
- 我的C币 登录后查看C币余额
- 我的收藏
- 我的下载
- 下载帮助
安全验证
文档复制为VIP权益,开通VIP直接复制
信息提交成功