bio4j-examples:Bio4j用法示例
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2021-05-12
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bio4j-examples-master.zip （83个子文件） 
bio4j-examples-master 
uniprotIds.txt 400B docs 
Find-lca-of-uniref-cluster.md 142B Get-gexf-for-taxon-uniref-clusters.md 1KB Extract-features-samples.md 207B Extract-citations-comments-samples.md 252B Get-gexf-for-protein-set-uniref-clusters.md 2KB Generate-gexf-whole-go.md 80B Find-articles-and-journals-from-swiss-prot-citations.md 86B Get-gexf-for-genome-element-uniref-clusters.md 2KB Get-node-and-rels-statistics.md 111B Find-interaction-paths.md 715B Apply-layout-algo-and-filters-to-gexf.md 106B src main java com bio4j examples geninfo GetProteinsAssociatedToGIs.java.md 10KB ncbi_taxonomy TaxonomyAlgo.java.md 7KB json model go GoSet.java.md 4KB GOTerm.java.md 6KB uniprot ProteinSet.java.md 4KB Protein.java.md 5KB enzyme GetProteinEnzymaticActivity.java.md 7KB uniref FindLCAOfUniRefCluster.java.md 12KB ExecuteBio4jExample.java.md 4KB go GetCumulativeFrequenciesForGoSet.java.md 9KB TransformGOJSONtoHierarchicalJSON.java.md 6KB GetGOAnnotation.java.md 18KB ExportGOJSONToCSV.java.md 8KB BasicProteinManipulation.java.md 4KB Create-simpledb-model.md 361B Delete-simpledb-model.md 163B Taxonomy-algo.md 207B Find-biggest-uniref-100-clusters.md 188B Split-uniprot-xml-file.md 109B Lowest-common-ancestor-test.md 114B Export-go-slim-to-gexf.md 151B old-examples tools SplitUniprotXmlFile.java 3KB ExtractFeaturesSamples.java 3KB simpledb DeleteSimpleDBModel.java 1KB CreateSimpleDBModel.java 18KB ApplyLayoutAlgoAndFiltersToGexf.java 3KB DeleteSimpleDBModel.java 996B FindArticlesAndJournalsFromSwissProtCitations.java 4KB ExtractCitationsCommentsSamples.java 5KB GetNodeAndRelsStatistics.java 19KB uniref FindBiggestUniref100Clusters.java 5KB taxonomy LowestCommonAncestorTest.java 2KB algo FindInteractionPaths.java 5KB InteractionsPathFinder.java 3KB uniprot SplitUniprotXmlFile.java 3KB ExtractFeaturesSamples.java 4KB FindArticlesAndJournalsFromSwissProtCitations.java 6KB ExtractCitationsCommentsSamples.java 6KB gephi GetGexfForGenomeElementUnirefClusters.java 24KB ApplyLayoutAlgoAndFiltersToGexf.java 4KB GetGexfForProteinSetUnirefClusters.java 24KB GenerateGexfWholeGo.java 12KB GetGexfForTaxonUnirefClusters.java 26KB ExportGoSlimToGexf.java 13KB RemoveRepetitionsFromPPICircuits.java 5KB ExportGoSetsToGephi.java 10KB ExecuteBio4jTool.java 1012B CreateSimpleDBModel.java 17KB CommonData.java 5KB version.sbt 40B go_annotation_including_cumulative_values_hierarchical.json 957KB go_annotation_including_cumulative_values.json 87KB executions.xml 2KB LICENSE 34KB src main java com bio4j examples geninfo GetProteinsAssociatedToGIs.java 6KB ExecuteBio4jExample.java 511B ncbi_taxonomy TaxonomyAlgo.java 4KB enzyme GetProteinEnzymaticActivity.java 4KB BasicProteinManipulation.java 1KB uniref FindLCAOfUniRefCluster.java 9KB go GetGOAnnotation.java 15KB TransformGOJSONtoHierarchicalJSON.java 3KB ExportGOJSONToCSV.java 5KB GetCumulativeFrequenciesForGoSet.java 6KB build.sbt 1KB getProteinEnzymaticActivity.properties 213B .gitignore 273B project plugins.sbt 145B build.properties 19B gis.txt 24B README.md 686B资源评论
