STAR-Fusion:STAR-Fusion代码库 （115个子文件） 
__star-fusion.fusion_candidates.final.abridged 8KB star-fusion.fusion_candidates.final.abridged 3KB notes.bhaas 1KB ChangeLog 8KB Dockerfile 5KB .dockerignore 27B star-fusion.fusion_candidates.final.abridged.FFPM 5KB star-fusion.fusion_candidates.final.abridged.FFPM 4KB STAR-Fusion.filter 26KB star-fusion.fusion_candidates.final 18KB .gitmodules 710B
Chimeric.out.junction.gz 635KB reads_1.fq.gz 246KB reads_2.fq.gz 245KB BT474f_1.fq.gz 75KB BT474f_2.fq.gz 75KB test.reads_2.fastq.gz 65KB test.reads_1.fastq.gz 65KB SKBR3f_2.fq.gz 45KB SKBR3f_1.fq.gz 44KB K562f_1.fq.gz 39KB K562f_2.fq.gz 39KB MCF7f_2.fq.gz 13KB MCF7f_1.fq.gz 12KB Set-IntervalTree-0.01.tar.gz 11KB STAR-Fusion.handle_multimapping_reads 17KB index.json 376B hg19.Chimeric.out.junction 766KB FGFR3--TACC3,AC016773.1.junctions 45KB LICENSE 1KB Makefile 5KB Makefile 396B Makefile 232B Makefile 150B STAR-Fusion.map_chimeric_reads_to_genes 14KB README.md 330B notes 332B notes 46B cigar_parser.ph 1KB overlapping_nucs.ph 1KB audit_read_and_fusion_filtering.pl 13KB get_FUSION_EVIDENCE_fastqs.pl 7KB filter_likely_RT_artifacts.pl 5KB append_breakpoint_junction_info.pl 5KB starF_partition_final_by_sc.pl 4KB partition_FUSION_EVIDENCE_fastqs_by_fusion.pl 4KB contrast_fusion_calls.extract_table.pl 3KB append_fusion_brkpt_adjacent_sequence.pl 3KB fq_sample_encoder.pl 3KB contrast_STARF_vs_FI_read_mappings.pl 2KB aBam_to_uBam_to_fastq.pl 2KB STAR-Fusion.run_many_samples.pl 2KB aggregate_predictions_add_sample_name.pl 2KB contrast_fusion_calls.pl 1KB incorporate_FFPM_into_final_report.pl 1KB convert_to_FFPM.pl 1KB fusion_to_read_tab.pl 1KB filter_by_min_FFPM.pl 1KB validate_ctat_genome_lib.pl 1KB column_exclusions.pl 966B samples_file_to_starF_cmds.pl 591B pair_up_fastq_files_1_2.pl 565B aBam_to_uBam_to_fastq.cmds_generator.pl 425B make_merged_prefix_fq.pl 420B test_itree.pl 359B ensure_coord_sorted_sam.pl 76B Gene_obj.pm 139KB GTF.pm 125KB GTF_utils.pm 11KB Nuc_translator.pm 10KB SAM_entry.pm 10KB Longest_orf.pm 10KB FusionEM.pm 9KB DelimParser.pm 6KB Pipeliner.pm 5KB Overlap_piler.pm 4KB Fasta_reader.pm 4KB Fastq_reader.pm 4KB TiedHash.pm 4KB Gene_overlap_check.pm 3KB ChimericCigarParser.pm 2KB SAM_reader.pm 2KB Fasta_retriever.pm 2KB Gene_obj_indexer.pm 1KB Process_cmd.pm 742B SeqUtil.pm 527B STAR-Fusion.predict 24KB aggregate_and_deconvolve_fusion_outputs.py 3KB sam_readname_cleaner.py 2KB sam_readname_cleaner.py 2KB prep_distributed_jobs.py 2KB write_sc_starF_cmds.py 2KB contrast_fusion_calls.scatterplot.Rscript 457B build.sh 693B build.sh 693B __test_run_Docker.sh 554B __test_run_Singularity.sh 538B build_push_makeSIMG.sh 239B make_simg.sh 224B __run_docker_interactive.sh 202B共 115 条
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