local_pca:沿基因组局部检查PCA的方法
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2021-05-08
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local_pca:沿基因组局部检查PCA的方法 （357个子文件） 
all_chrs.bcf 13KB chr1.bcf 7KB chr2.bcf 7KB test_with_pipes.bcf 4KB test.bcf 4KB references.bib 218KB plos2015.bst 37KB Mt35.liftover.chain 6.33MB CHANGELOG 135B baposter.cls 41KB all_chrs.bcf.csi 672B chr1.bcf.csi 385B chr2.bcf.csi 372B small_test.vcf.gz.csi 302B test.bcf.csi 99B test_with_pipes.bcf.csi 98B individuals.csv 61KB DESCRIPTION 517B .gitignore 83B .gitignore 66B .gitignore 62B .gitignore 54B .gitignore 41B .gitignore 40B .gitignore 29B .gitignore 23B .gitignore 21B .gitignore 17B .gitignore 13B .gitignore 12B .gitignore 12B female.gmap 9.57MB decode_female_chr7.gmap 72KB decode_female_chr7.gmap 72KB
refGene.txt.gz 1.83MB small_test.vcf.gz 3KB test.tped.gz 290B
type_bp_size_10000_weights_none_npc_2_nmds_2.html 67.2MB type_snp_size_1000_weights_none_npc_2_nmds_2.html 66.59MB type_snp_size_10000_weights_none_npc_5_nmds_4.html 34.16MB type_bp_size_100000_weights_none_npc_2_nmds_2.html 11.96MB type_snp_size_10000_weights_none_npc_2_nmds_2.html 11.78MB medicago_data_setup.html 3.66MB example-run-summary.html 1.07MB simple_example.html 307KB run_summary.html 281KB
oregon.jpg 1.26MB novembre-map-genes-mirror-geography-crop.jpg 303KB maize_pca.jpg 172KB mathieson-genome-scan.jpg 160KB hanli.jpg 95KB type_snp_size_1000_weights_none_npc_2_nmds_2.config.json 66.59MB type_bp_size_100000_weights_none_npc_2_nmds_2.config.json 11.96MB type_snp_size_10000_weights_none_npc_5_nmds_4.config.json 314B type_snp_size_10000_weights_none_npc_2_nmds_2.config.json 314B type_bp_size_10000_weights_none_npc_2_nmds_2.config.json 312B Makefile 3KB Makefile 900B notes.md 42KB README.md 8KB msp-notes.md 5KB README.md 5KB review-to-do.md 2KB README.md 2KB README.md 753B README.md 205B NAMESPACE 418B small_skeleton.pbs 447B skeleton.pbs 447B
sym_threeway_pca.pdf 88B sym_threeway_corners.pdf 81B Medicago_MDS_1D_and_gene_count.pdf 6.34MB evolution-2017-talk.pdf 3.1MB oxford-2016-local-pca-poster.pdf 2.44MB drosophila-MDS-extract.pdf 1.23MB FigS_Together_MDS_plot_allchr.pdf 879KB FigS_pca_plot_allchr_human.pdf 504KB Medicago_MDS_plot_allchr_win103_PCAk2.pdf 472KB Medicago_MDS_plot_allchr_win103_PCAk5.pdf 465KB drosophila_just_2R_3L.pdf 394KB medicago_mds_gene_count_extract.pdf 296KB Fig1_allchr_Together_MDS_plot_compact_with_ChrX_inv.pdf 275KB Fig1_allchr_Together_MDS_plot_compact.pdf 274KB MDS_allchr_Together_plot_samples_noinv.pdf 244KB Fig1_allchr_Together_MDS_plot_PCAk5_sqrt.pdf 239KB Fig1_allchr_Together_MDS_plot_PCAk5_win103.pdf 239KB Fig1_allchr_Together_MDS_plot_PCAk5.pdf 238KB FigS_plot_corner_pca-1_run_015598.pdf 215KB drosophila_recomb_mds_for_talk.pdf 190KB drosophila_just_recomb_mds.pdf 188KB FigS_plot_corner_pca-1_run_016913.pdf 172KB Fig3_pca_plots_color_by_inv_allchr_with_ChrX_In1A.pdf 168KB Fig2_pca_plots_allchr_3peaks_label_update.pdf 162KB FigS_Drosophila_missings_against_MDS1_win103.pdf 160KB Drosophila_missings_against_MDS1_win103.pdf 160KB FigS_PCA_chr8_outliers_combine_update.pdf 159KB Fig6_Together_MDS_plot_chr3_final.pdf 133KB FigS_plot_corners-1_run_015598.pdf 129KB Fig2_pca_plots_allchr_3peaks_byMDS.pdf 127KB FigS_plot_corners-1_run_031486.pdf 118KB共 357 条
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