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PangenomeVis:交互式,基于JavaScript的微生物全基因组图浏览器
共480个文件
ctx:95个
bam:94个
bai:94个
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2021-05-10
11:47:44
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PangenomeVis 交互式,基于JavaScript的微生物全基因组图浏览器 变异发现主要是通过在感兴趣的样本与其参考样本仅略有不同的假设下将样本基因组与单个规范参考基因组进行比较来进行的。 但是,许多病原体如此Swift地使他们的基因组多样化,以致样本和参照物可能相差很大。 当这些差异足够大时,现有算法无法将样本序列数据与参考充分对齐,并且潜在的毒力因子(例如,耐药性,免疫逃逸)的变异可能无法检测到。 Broad Institute正在基于新兴的“图基因组”范例开发一种新的变体发现算法。 图基因组是一种数据结构(通常是顶点,边线和样本元数据的多重图),其中包含许多参考基因组以及感兴趣样本的测序数据。 来自一个或多个基因组的子序列由顶点表示,而子序列之间的相邻性由边缘表示。 每个边缘都分配有一种与特定样品相关的颜色,因此允许数据结构将大量基因组集合表示为单个紧凑且可导航的对象。
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PangenomeVis:交互式,基于JavaScript的微生物全基因组图浏览器 (480个子文件)
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sample_A.alt1_imperfect.bam.bai 96B
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sample_F.alt2_imperfect.bam.bai 96B
sample_E.ref_imperfect.bam.bai 96B
sample_B.ref_imperfect.bam.bai 96B
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sample_A.alt2_imperfect.bam 194KB
sample_A.alt1_imperfect.bam 194KB
sample_B.alt2_imperfect.bam 193KB
sample_B.alt1_imperfect.bam 193KB
sample_F.ref_imperfect.bam 193KB
sample_E.ref_imperfect.bam 193KB
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