optofit:用于将生物物理模型拟合到光学记录的神经信号的 Python 框架
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2021-06-12
21:43:53
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optofit-master.zip （83个子文件） 
optofit-master 
setup.py 175B .gitignore 675B results seed_60017_constant 
figure_4.png 76KB figure_5.png 76KB figure_1.png 127KB figure_6.png 64KB figure_2b.png 7KB figure_2a.png 20KB figure_3.png 49KB squid_results.pkl 29.92MB LICENSE 18KB optofit __init__.py 21B models observation_model.py 730B component.py 1KB __init__.py 21B parameters.py 2KB hyperparameters.py 2KB instantiation.py 3KB model.py 18KB neuron __init__.py 21B compartment.py 8KB neuron.py 5KB channels.py 44KB cinference __init__.py 21B pmcmc.pyx 10KB observation __init__.py 0B observable.py 12KB utils __init__.py 21B utils.py 9KB simulation __init__.py 21B simulate.py 5KB stimulus.py 4KB cneuron gpchannel.py 13KB __init__.py 21B component.pxd 629B component.pyx 2KB compartment.pxd 430B compartment.pyx 8KB channels.pyx 7KB simulate.pyx 5KB channels.pxd 1008B inference __init__.py 21B observation_likelihood.py 667B distributions.py 12KB fitting.py 2KB mcmc_transitions.py 21KB particle_mcmc.py 17KB test config.pb 702B data_utilities.py 4KB __init__.py 21B conductance_test.py 7KB geweke_test.py 6KB bayes_opt_target.py 2KB plotting plotting.py 7KB __init__.py 21B population __init__.py 21B population.py 5KB examples new_model_demo.py 6KB two_gp_demo.py 21KB cython_demo.py 5KB fit_als_control_neuron.py 7KB gp_demo.py 7KB gp_squid_test.py 8KB my_two_gp_demo.py 20KB README.md 105B drafts mds_writeup.tex 3KB cosyne draft.tex 9KB map_kdr_to_logistic.py 1KB draft.bib 572B
draft.pdf 475KB imsart.cls 5KB draft-mpgraph.mp 5B dk_dt.pdf 28KB imsart-nameyear.bst 38KB figure1.pdf 232KB #map_na_to_logistic.py# 1KB imsart.sty 92KB macros.sty 4KB make_figure_1.py 17KB optoclassify generate_classification_data.py 6KB autograd_simple_test.py 3KB autograd_hh_demo.py 4KB hh_dynamics.py 3KB
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