UrbanGrasslandAllergens:R代码和基本数据，用于分析柏林草原的致敏特性
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2021-04-19
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UrbanGrasslandAllergens-master.zip （69个子文件） 
UrbanGrasslandAllergens-master results 
info.txt 96B clean data 
species_allergenicity_data.csv 58KB species_abundance_data_metadata.csv 724B species_abundance_data.csv 30KB molecule_data.csv 133KB Urban_Grassland_Allergens_data.Rdata 381KB species_allergenicity_data_metadata.csv 4KB environmental_factors_data.csv 5KB molecule_data_metadata.csv 985B environmental_factors_data_metadata.csv 2KB scripts utils p2star.R 369B add.stats.R 8KB cor.print.R 2KB MASTER Run analyses.R 3KB Data import import Cityscapelab data.R 5KB extract molecules.R 26KB import allergenicity data.R 12KB Calculate BNI for BIBS.R 2KB Illustration Figures manuscript 1.0.R 29KB Analyses 5a. Beta dissimilarity in species.R 10KB 1. ordination allergenics in allfam space.R 7KB 2b. Allergenic richness vs NOVELTY.R 5KB test spatial autocorrelation.R 3KB 4c. ALLFAM diversity vs. NOVELTY.R 4KB 5b. Beta dissimilarity in molecules.R 16KB 3. Mean PAV analyses.R 8KB 6d. Monthly AllfamR with novelty.R 4KB fit.allergen.glms.R 18KB 4b. Molecule diversity vs. NOVELTY.R 4KB 4a. Molecule diversity vs DIVERSITY.R 5KB 6a. Analyses temporal spectrum.R 10KB 6b. Monthly SRall with novelty.R 4KB 6c. Monthly AR with novelty.R 3KB 2a. Allergenic richness vs. DIVERSITY .R 4KB Import_all_data.R 2KB Data formatting Temporal spectrum.R 42KB molecules per plot.R 7KB community allergenicity.R 18KB Export formatted datatables.R 5KB calculate PAV.R 5KB family level comm.R 1KB UrbanAllergensAnalyses.Rmd 29KB README.md 1KB data uniprot data.csv 97KB SDAP allergen database.csv 133KB manual updates Unassigned molecules.csv 7KB manual_updates_allergen_families_Oct2020.csv 3KB species_abundance_data.csv 32KB Allergome molecules_2019.csv 59KB grass allergens.csv 2KB Urban_Grassland_Allergens_data.Rdata 2.94MB formatted data species_allergenicity.csv 108KB allergen_molecule_summary.csv 50KB allergen_species_by_molecule_matrix.csv 48KB allergen_molecule_data.csv 157KB environmental_factors_data.csv 8KB species_flowering_months_April 2020.csv 14KB Schittko et al. 2020 BNI_function.R 4KB trait4.csv 32KB abundance.csv 30KB factor.csv 8KB phenology.bootstrap.test.Rdata 2KB WHO_IUIS allergen database 2019.csv 34KB species_data.csv 121KB
Berlin map of 56 plots.png 1.51MB Species allergenicity scores.csv 31KB Allfam molecule database.csv 44KB AllergenOnline_v19- September 2019.csv 271KB .gitignore 262B资源评论
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