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pangea:PANGEA-HIV 分析
共1507个文件
txt:472个
fa:180个
tre:90个
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2021-07-10
09:20:34
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盘古 这是 PANGEA-HIV 系统动力学方法比较练习的分析资料库。 数据集和说明可以在找到。 这个存储库的目的是生成树、进化率等,以便在(仅仅!)完成第一组分析的月份内解决更多有趣的事情。 序列:原始和处理过的序列文件 raxmltrees:由 RAxML 生成的 ML 树 lsd:LSD 生成的类时钟树,基于 RAxML 树 mrbayestrees:MrBayes 的输入文件和相应的输出 phymltrees:PhyML 的输入文件(假设 GTR+freerates(20)) 混合模型:Bethany 混合流行病模型的 BEAST XML 文件 phytime:phytime 的输入文件,使用以 ape 的 rtt 为根的 RAxML 拓扑 skyride:基于 LSD 树的 skyrides 特点:M/F的M2模型拟合 treeshape:LSD 树的 Sackin 索引和
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pangea:PANGEA-HIV 分析 (1507个子文件)
RAxML_bestTree.180914_HPTN071_scA_rep1-n0005_SIMULATED 80KB
RAxML_bestTree.180914_HPTN071_scB_rep1-n0005_SIMULATED 84KB
RAxML_bestTree.180914_HPTN071_scC_rep1-n0005_SIMULATED 81KB
RAxML_bestTree.300914_Village_scA_sample1_epi1 34KB
RAxML_bestTree.300914_Village_scB_sample1_epi1 28KB
RAxML_bestTree.300914_Village_scC_sample1_epi1 31KB
RAxML_bestTree.300914_Village_scD_sample1_epi2 98KB
RAxML_bestTree.300914_Village_scE_sample1_epi2 91KB
RAxML_bestTree.300914_Village_scF_sample1_epi2 92KB
RAxML_bestTree.300914_Village_scG_sample1_epi3 21KB
RAxML_bestTree.300914_Village_scG_sample2_epi3 62KB
RAxML_bestTree.300914_Village_scH_sample1_epi3 33KB
RAxML_bestTree.300914_Village_scH_sample2_epi3 98KB
RAxML_bestTree.300914_Village_scI_sample1_epi3 31KB
RAxML_bestTree.300914_Village_scI_sample2_epi3 94KB
300914_Village_scD_sample1_epi2_mb_clock.nex.ckp 180KB
281014_Village_scD_sample1_epi2_mb_clock.nex.ckp 180KB
300914_Village_scH_sample2_epi3_mb_clock.nex.ckp 179KB
281014_Village_scH_sample2_epi3_mb_clock.nex.ckp 179KB
300914_Village_scI_sample2_epi3_mb_clock.nex.ckp 173KB
281014_Village_scI_sample2_epi3_mb_clock.nex.ckp 173KB
300914_Village_scF_sample1_epi2_mb_clock.nex.ckp 170KB
281014_Village_scF_sample1_epi2_mb_clock.nex.ckp 170KB
300914_Village_scE_sample1_epi2_mb_clock.nex.ckp 166KB
281014_Village_scE_sample1_epi2_mb_clock.nex.ckp 166KB
180914_HPTN071_scB_rep1-n0005_SIMULATED_mb_clock.nex.ckp 157KB
281014_HPTN071_scB_rep1_SIMULATED_mb_clock.nex.ckp 157KB
180914_HPTN071_scC_rep1-n0005_SIMULATED_mb_clock.nex.ckp 152KB
281014_HPTN071_scC_rep1_SIMULATED_mb_clock.nex.ckp 152KB
180914_HPTN071_scA_rep1-n0005_SIMULATED_mb_clock.nex.ckp 150KB
281014_HPTN071_scA_rep1_SIMULATED_mb_clock.nex.ckp 150KB
281014_Village_scG_sample2_epi3_mb_clock.nex.ckp 117KB
300914_Village_scG_sample2_epi3_mb_clock.nex.ckp 117KB
281014_Village_scA_sample1_epi1_mb_clock.nex.ckp 68KB
300914_Village_scA_sample1_epi1_mb_clock.nex.ckp 68KB
300914_Village_scH_sample1_epi3_mb_clock.nex.ckp 66KB
281014_Village_scH_sample1_epi3_mb_clock.nex.ckp 66KB
281014_Village_scI_sample1_epi3_mb_clock.nex.ckp 64KB
281014_Village_scB_sample1_epi1_mb_clock.nex.ckp 63KB
300914_Village_scC_sample1_epi1_mb_clock.nex.ckp 63KB
281014_Village_scC_sample1_epi1_mb_clock.nex.ckp 57KB
300914_Village_scB_sample1_epi1_mb_clock.nex.ckp 57KB
300914_Village_scG_sample1_epi3_mb_clock.nex.ckp 45KB
281014_Village_scG_sample1_epi3_mb_clock.nex.ckp 45KB
style.css 912B
281014_HPTN071_scB_rep8_SIMULATED_metadata.csv 61KB
281014_HPTN071_scB_rep1_SIMULATED_metadata.csv 61KB
281014_HPTN071_scB_rep16_SIMULATED_metadata.csv 60KB
281014_HPTN071_scB_rep9_SIMULATED_metadata.csv 60KB
281014_HPTN071_scB_rep14_SIMULATED_metadata.csv 60KB
281014_HPTN071_scB_rep3_SIMULATED_metadata.csv 60KB
281014_HPTN071_scB_rep11_SIMULATED_metadata.csv 59KB
281014_HPTN071_scB_rep6_SIMULATED_metadata.csv 59KB
281014_HPTN071_scB_rep5_SIMULATED_metadata.csv 59KB
281014_HPTN071_scB_rep18_SIMULATED_metadata.csv 59KB
281014_HPTN071_scB_rep20_SIMULATED_metadata.csv 58KB
281014_HPTN071_scC_rep8_SIMULATED_metadata.csv 58KB
281014_HPTN071_scC_rep1_SIMULATED_metadata.csv 58KB
281014_HPTN071_scB_rep2_SIMULATED_metadata.csv 58KB
281014_HPTN071_scB_rep13_SIMULATED_metadata.csv 58KB
281014_HPTN071_scB_rep19_SIMULATED_metadata.csv 58KB
281014_HPTN071_scC_rep16_SIMULATED_metadata.csv 58KB
281014_HPTN071_scA_rep1_SIMULATED_metadata.csv 58KB
281014_HPTN071_scB_rep17_SIMULATED_metadata.csv 58KB
281014_HPTN071_scA_rep6_SIMULATED_metadata.csv 57KB
281014_HPTN071_scA_rep3_SIMULATED_metadata.csv 57KB
281014_HPTN071_scB_rep12_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep20_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep3_SIMULATED_metadata.csv 57KB
281014_HPTN071_scB_rep15_SIMULATED_metadata.csv 57KB
281014_HPTN071_scA_rep16_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep13_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep11_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep9_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep6_SIMULATED_metadata.csv 57KB
281014_HPTN071_scC_rep14_SIMULATED_metadata.csv 56KB
281014_HPTN071_scC_rep5_SIMULATED_metadata.csv 56KB
281014_HPTN071_scC_rep17_SIMULATED_metadata.csv 56KB
281014_HPTN071_scA_rep14_SIMULATED_metadata.csv 56KB
281014_HPTN071_scB_rep10_SIMULATED_metadata.csv 56KB
281014_HPTN071_scC_rep18_SIMULATED_metadata.csv 56KB
281014_HPTN071_scB_rep7_SIMULATED_metadata.csv 55KB
281014_HPTN071_scA_rep13_SIMULATED_metadata.csv 55KB
281014_HPTN071_scC_rep12_SIMULATED_metadata.csv 55KB
281014_HPTN071_scC_rep2_SIMULATED_metadata.csv 55KB
281014_HPTN071_scC_rep15_SIMULATED_metadata.csv 55KB
281014_HPTN071_scA_rep9_SIMULATED_metadata.csv 54KB
281014_HPTN071_scB_rep4_SIMULATED_metadata.csv 54KB
281014_HPTN071_scA_rep8_SIMULATED_metadata.csv 54KB
281014_HPTN071_scC_rep7_SIMULATED_metadata.csv 54KB
281014_HPTN071_scA_rep11_SIMULATED_metadata.csv 54KB
281014_HPTN071_scC_rep10_SIMULATED_metadata.csv 54KB
281014_HPTN071_scC_rep19_SIMULATED_metadata.csv 53KB
281014_HPTN071_scA_rep5_SIMULATED_metadata.csv 53KB
281014_HPTN071_scA_rep12_SIMULATED_metadata.csv 53KB
281014_HPTN071_scA_rep2_SIMULATED_metadata.csv 52KB
281014_HPTN071_scC_rep4_SIMULATED_metadata.csv 52KB
281014_HPTN071_scA_rep20_SIMULATED_metadata.csv 52KB
281014_HPTN071_scA_rep18_SIMULATED_metadata.csv 52KB
281014_HPTN071_scA_rep17_SIMULATED_metadata.csv 52KB
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