### Authors ###
Core code was contributed by Alistair Boettiger and Jeffrey Moffitt.
All core code contained here is licensed under the creative commons CC BY NC. See individual help files for more information.
Some functions are dependent upon the sister repository `storm-analysis`, written primarily by Hazen Babcock.
This repository is available here: https://github.com/ZhuangLab/storm-analysis
## Installation Instructions ##
1. Clone this repository (see below) via git or copy the contents to your hard drive
* New to Git? Recommended: Sign up for an account at Github.com and `fork` the `matlab-storm` project.
* Install Windows Github on your local machine (or GitK).
* Sign into to Windows Github on your local machine and clone the github project.
2. Clone the storm-analysis repository via git or copy the contents to your hard drive.
2. Copy `startup_demo.m` into your default matlab working directory. Typically this directory is "/My Documents/MATLAB"
3. Change the paths within startup_demo.m to specify the locations of the `matlab-storm` and `storm-analysis` repositories and set up a scratch folder.
Then change the name of `startup_demo.m` to `startup.m` (or name it something else and instruct your existing `startup.m` script to call it).
5. Launch matlab.
## Instructions for Contributing to matlab-storm
Everyone is welcome to contribute to matlab-storm but any code contributed must follow several general 'clean code' standards.
1. New functions should be written in the form described in `/Templates/FunctionTemplate.m` and placed in an appropriate folder in /Functions
2. Modifications to existing functions should remain backwards compatible as much as possible.
## Code Attribution
1. Code repository
`title = {https://github.com/ZhuangLab/matlab-storm}`
`version = {git commit ce8094b603}`
`authors = {Alistair Boettiger and Jeffrey Moffitt}`
## Additional Software for Analysis
Some aspects of this analysis package depend on the Insight3 which can be provided by request (contact Professor Xiaowei Zhuang zhuang at chem.harvard.edu).
For instructions on integrating this software with `matlab-storm`, contact Alistair or Jeff.
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GUIs and functions for analyzing STORM data in MATLAB.zip
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GUIs and functions for analyzing STORM data in MATLAB
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GUIs and functions for analyzing STORM data in MATLAB.zip (256个子文件)
setpaths.bat 84B
STORMrender.fig 41KB
ChangeColors.fig 33KB
STORMfinder.fig 17KB
GUIDaoParameters.fig 17KB
GUIFitParameters.fig 15KB
ChromeWarpParameters.fig 11KB
GUIgpuParameters.fig 7KB
SteveMosaicViewer.fig 5KB
.gitattributes 534B
.gitignore 2KB
488VisBead.ini 5KB
561VisBead.ini 5KB
750IRBead.ini 5KB
647IRBead.ini 5KB
647iniZbeads.ini 5KB
647data_pars.ini 5KB
647VisBead.ini 5KB
647data_pars.ini 5KB
GUIDaoParameters.m 47KB
STORMfinder.m 43KB
CalcChromeWarp.m 38KB
GUIFitParameters.m 34KB
cp2tform3D.m 30KB
WarpPoints.m 28KB
STORMrender.m 21KB
ChromeWarpParameters.m 18KB
RunDotFinder.m 17KB
FeducialDriftCorrection.m 16KB
AnalyzeSTORM.m 15KB
CalcZcurves.m 15KB
SimulateSTORM.m 15KB
GUIgpuParameters.m 14KB
list2img.m 13KB
ReadMasterMoleculeList.m 12KB
ReadDax.m 12KB
daoSTORM.m 11KB
ReadDaxBeta.m 11KB
StructureArray.m 11KB
polyfitn.m 10KB
viewSteveMosaic.m 8KB
splitQVdax.m 8KB
WriteMoleculeList.m 8KB
ChangeColors.m 8KB
ConvertDaxToTiff.m 8KB
MosaicViewer.m 8KB
ComputeChromeWarp.m 8KB
ReadInfoFile.m 8KB
WriteDaoSTORMParameters.m 7KB
fxn_AddOverlay.m 7KB
GetSwitchingStats.m 7KB
MovieToMlist.m 7KB
automatch_files.m 7KB
MatchFeducials.m 6KB
Plot3DWarpResults.m 6KB
CompareReconstructions.m 6KB
ApplyChromeWarp.m 6KB
ReadHighResImage.m 6KB
GPUmultifit.m 6KB
chromewarp.m 6KB
ConvertHRImageToMList.m 6KB
modify_script.m 6KB
WriteInfoFiles.m 6KB
SteveMosaicViewer.m 6KB
GenerateMListReport.m 6KB
RunMenuFeudicalDrift.m 5KB
Im3D.m 5KB
XcorrDriftCorrect.m 5KB
LoadTiles.m 5KB
RenderStack.m 5KB
RenderMList.m 5KB
TimeAverageMovie.m 5KB
PresentationPlot.m 5KB
CheckParameter.m 5KB
Im3Dslices.m 5KB
applyfilter.m 5KB
ReadParsFile.m 5KB
WarpImage.m 5KB
ParseVariableArguments.m 5KB
ParseInsightZCalibration.m 5KB
MatchSampleAndRefData.m 4KB
STORMcell2img.m 4KB
SaveImage.m 4KB
SaveAs.m 4KB
FitZcurve.m 4KB
List2ImgXYZ.m 4KB
CreateMoleculeList.m 4KB
LoadOverlay.m 4KB
ModifydaoSTORMXML.m 4KB
MatchSampleAndRefFiles.m 4KB
WriteDAXFiles.m 4KB
MultiChnDriftCorrect.m 4KB
SystemRun.m 4KB
MultiBinLoad.m 4KB
RecalibrateZ.m 4KB
fit2Dgauss.m 4KB
TransferInfoFileFields.m 4KB
msublist.m 4KB
GPUmultifitDax.m 4KB
fit3Dgauss.m 3KB
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