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physical_validation: A Python package to assess the physical validity of molecular simulation results
=====================================================================================================
`physical_validation` is a package testing results obtained by molecular simulations for their physical validity.
Please cite
> Merz PT, Shirts MR (2018) Testing for physical validity in molecular simulations. PLoS ONE 13(9): e0202764. https://doi.org/10.1371/journal.pone.0202764
> Merz et al., (2022). physical_validation: A Python package to assess the physical validity of molecular simulation results. Journal of Open Source Software, 7(69), 3981, https://doi.org/10.21105/joss.03981
`physical_validation` incorporates the functionality of [checkensemble](https://github.com/shirtsgroup/checkensemble).
This software is developed in the Shirts group at University of Colorado in Boulder.
Documentation
-------------
Please check
[https://physical-validation.readthedocs.io](http://physical-validation.readthedocs.io)
for the full reference.
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分子模拟的物理验证___下载.zip
共277个文件
py:80个
dat:69个
yml:21个
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分子模拟的物理验证___下载.zip (277个子文件)
dump.atom 36KB
atomtypes.atp 3KB
make.bat 817B
paper.bib 2KB
setup.cfg 707B
constant_of_motion.dat 19KB
constant_of_motion.dat 19KB
constant_of_motion.dat 19KB
constant_of_motion.dat 19KB
constant_of_motion.dat 19KB
constant_of_motion.dat 19KB
total.dat 14KB
potential.dat 14KB
total.dat 14KB
potential.dat 14KB
total.dat 14KB
potential.dat 14KB
total.dat 14KB
potential.dat 14KB
total.dat 14KB
potential.dat 14KB
total.dat 14KB
potential.dat 14KB
kinetic.dat 12KB
kinetic.dat 12KB
kinetic.dat 12KB
kinetic.dat 12KB
kinetic.dat 12KB
kinetic.dat 12KB
number_of_species.dat 11KB
potential.dat 11KB
potential.dat 11KB
potential.dat 11KB
potential.dat 11KB
number_of_species.dat 10KB
volume.dat 10KB
volume.dat 10KB
volume.dat 10KB
volume.dat 10KB
potential.dat 10KB
potential.dat 10KB
potential.dat 10KB
potential.dat 10KB
number_of_species.dat 9KB
number_of_species.dat 9KB
volume.dat 9KB
volume.dat 9KB
number_of_species.dat 6KB
number_of_species.dat 5KB
number_of_species.dat 5KB
number_of_species.dat 5KB
potential.dat 2KB
conserved.dat 2KB
total.dat 2KB
pressure.dat 2KB
temperature.dat 2KB
kinetic.dat 2KB
volume.dat 1KB
temperature.dat 34B
temperature.dat 34B
pressure.dat 32B
conserved.dat 32B
kinetic.dat 32B
total.dat 32B
pressure.dat 32B
conserved.dat 32B
kinetic.dat 32B
total.dat 32B
volume.dat 30B
potential.dat 30B
volume.dat 30B
potential.dat 30B
number_of_species.dat 4B
number_of_species.dat 4B
ener.edr 1KB
ener.edr 1KB
.gitignore 1KB
confout.gro 1KB
confout.gro 1KB
conf.gro 739B
water.in 935B
MANIFEST.in 126B
openmm_replica_exchange.ipynb 619KB
kinetic_energy_equipartition.ipynb 549KB
ensemble_check.ipynb 388KB
integrator_validation.ipynb 293KB
kinetic_energy_distribution.ipynb 103KB
ffnonbonded.itp 396KB
ffbonded.itp 21KB
ff_dum.itp 1KB
spc.itp 815B
forcefield.itp 237B
.zenodo.json 1KB
log.lammps 85KB
LICENSE 1KB
water.lmp 56KB
Makefile 621B
paper.md 7KB
CONTRIBUTING.md 2KB
README.md 2KB
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