Python库|SigProfilerTopography-0.3.14.tar.gz资源-CSDN文库

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140 浏览量 2022-05-22 02:16:07 上传评论收藏 22.15MB GZ 举报

共51个文件

py：28个

bed：8个

txt：7个

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SigProfilerTopography-0.3.14.tar.gz （51个子文件）

SigProfilerTopography-0.3.14

MANIFEST.in 2KB

PKG-INFO 387B

SigProfilerTopography.egg-info

PKG-INFO 387B

requires.txt 201B

not-zip-safe 1B

SOURCES.txt 3KB

top_level.txt 22B

dependency_links.txt 1B

setup.cfg 38B

SigProfilerTopography

Topography.py 72KB

__init__.py 418B

lib

epigenomics

ENCFF291WFP_H3K27me3_breast_epithelium.bed 267KB

ENCFF154XFN_H3K27ac_breast_epithelium.bed 7.07MB

ENCFF065TIH_H3K4me3_breast_epithelium.bed 3.12MB

ENCFF530PJF_liver_H3K9me3-human.bigBed 5.96MB

ENCFF065FJK_H3K9me3_breast_epithelium.bed 2.1MB

ENCFF906MJM_H3K36me3_breast_epithelium.bed 6.54MB

ENCFF336DDM_H3K4me1_breast_epithelium.bed 1.11MB

transcripts

GRCh37_transcripts.txt 5.56MB

replication

GSM923442_hg19_wgEncodeUwRepliSeqMcf7WaveSignalRep1.wig 22.19MB

GSM923442_hg19_wgEncodeUwRepliSeqMcf7PkRep1.bed 217KB

GSM923442_hg19_wgEncodeUwRepliSeqMcf7ValleysRep1.bed 217KB

ucscgenome

hg19ChromSizesDict.txt 462B

hg38ChromSizesDict.txt 452B

source

processivity

ProcessivityAnalysis.py 17KB

__init__.py 0B

plotting

__init__.py 0B

NucleosomeOccupancyAverageSignalFigures.py 73KB

TranscriptionReplicationStrandBiasFigures.py 143KB

ReplicationTimeNormalizedMutationDensityFigures.py 23KB

ProcessivityFigures.py 27KB

transcriptionstrandbias

__init__.py 0B

TranscriptionStrandBiasAnalysis.py 45KB

nucleosomeoccupancy

ChrBasedSignalArrays.py 13KB

NucleosomeOccupancyAnalysis.py 56KB

__init__.py 0B

PlotChrBasedSignalArrays.py 13KB

replicationstrandbias

__init__.py 0B

ReplicationStrandBiasAnalysis.py 50KB

__init__.py 0B

replicationtime

ReplicationTimeAnalysis.py 74KB

__init__.py 0B

commons

NucleosomeOccupancySignalCountArraysAndFigures.py 29KB

ChrBasedSignalArrays.py 27KB

TopographyCommons.py 166KB

__init__.py 0B

PartitionSinglePointMutationsData.py 908B

PartitionIndelsData.py 882B

DataPreparationCommons.py 20KB

setup.py 853B

README.md 6KB

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