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# NLTools
Python toolbox for analyzing neuroimaging data. Compatible with both Python 2.7 and Python 3.6. It is particularly useful for conducting multivariate analyses. It is originally based on Tor Wager's object oriented matlab [canlab core tools](http://wagerlab.colorado.edu/tools) and relies heavily on [nilearn](http://nilearn.github.io) and [scikit learn](http://scikit-learn.org/stable/index.html)
### Installation
1. Method 1
```
pip install nltools
```
2. Method 2 (Recommended)
```
pip install git+https://github.com/ljchang/neurolearn
```
3. Method 3
```
git clone https://github.com/ljchang/neurolearn
python setup.py install
```
### Dependencies
nltools requires several dependencies. All are available in pypi. Can use `pip install 'package'`
- nibabel>=2.0.1
- scikit-learn>=0.19.1
- nilearn>=0.2
- pandas>=0.20
- numpy>=1.9
- seaborn>=0.7.0
- matplotlib
- scipy
- six
- pynv
- joblib
### Optional Dependencies
- mne
- requests
- networkx
- ipywidgets >=5.2.2
### Documentation
Current Documentation can be found at [readthedocs](http://neurolearn.readthedocs.org/en/latest).
Please see our [tutorials](http://neurolearn.readthedocs.io/en/latest/auto_examples/index.html), which provide numerous examples for how to use the toolbox.
### Preprocessing
Please see our [cosanlab_preproc](https://github.com/cosanlab/cosanlab_preproc) library for nipype pipelines to perform preprocessing on neuroimaging data.
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资源分类:Python库 所属语言:Python 资源全名:nltools-0.3.5.tar.gz 资源来源:官方 安装方法:https://lanzao.blog.csdn.net/article/details/101784059
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nltools-0.3.5.tar.gz (43个子文件)
nltools-0.3.5
MANIFEST.in 25B
PKG-INFO 760B
nltools
mask.py 6KB
pbs_job.py 17KB
simulator.py 18KB
utils.py 12KB
data
brain_data.py 61KB
adjacency.py 23KB
__init__.py 308B
design_matrix.py 16KB
stats.py 24KB
analysis.py 12KB
tests
test_simulator.py 405B
test_cross_validation.py 2KB
test_data.py 24KB
test_analysis.py 1KB
datasets.py 5KB
cross_validation.py 5KB
resources
MNI152_T1_3mm_brain_mask.nii.gz 7KB
gray_matter_mask.nii.gz 36KB
MNI152_T1_3mm_brain.nii.gz 188KB
onsets_example.txt 1KB
MNI152_T1_3mm.nii.gz 935KB
MNI152_T1_2mm.nii.gz 1.34MB
MNI152_T1_2mm_brain_mask_no_ventricles.nii.gz 21KB
MNI152_T1_3mm_brain_mask_no_ventricles.nii.gz 8KB
covariates_example.csv 59KB
MNI152_T1_2mm_brain_mask.nii.gz 19KB
MNI152_T1_2mm_brain.nii.gz 521KB
plotting.py 20KB
prefs.py 4KB
__init__.py 664B
file_reader.py 3KB
version.py 106B
nltools.egg-info
PKG-INFO 760B
requires.txt 162B
SOURCES.txt 1KB
top_level.txt 8B
dependency_links.txt 1B
setup.cfg 38B
requirements.txt 139B
setup.py 1KB
README.md 2KB
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