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Bioinformatics with Python Cookbook-Tiago Antao
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Bioinformatics with Python Cookbook_Tiago Antao
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Bioinformatics with Python Cookbook
Copyright © 2015 Packt Publishing
All rights reserved. No part of this book may be reproduced, stored in a retrieval system, or
transmitted in any form or by any means, without the prior written permission of the publisher,
except in the case of brief quotations embedded in critical articles or reviews.
Every effort has been made in the preparation of this book to ensure the accuracy of the
information presented. However, the information contained in this book is sold without
warranty, either express or implied. Neither the author, nor Packt Publishing, and its dealers
and distributors will be held liable for any damages caused or alleged to be caused directly or
indirectly by this book.
Packt Publishing has endeavored to provide trademark information about all of the companies
and products mentioned in this book by the appropriate use of capitals. However, Packt
Publishing cannot guarantee the accuracy of this information.
First published: June 2015
Production reference: 1230615
Published by Packt Publishing Ltd.
Livery Place
35 Livery Street
Birmingham B3 2PB, UK.
ISBN 978-1-78217-511-7
www.packtpub.com
Credits
Author
Tiago Antao
Reviewers
Cho-Yi Chen
Giovanni M. Dall'Olio
Commissioning Editor
Nadeem N. Bagban
Acquisition Editor
Kevin Colaco
Content Development Editor
Gaurav Sharma
Technical Editor
Shashank Desai
Copy Editor
Relin Hedly
Project Coordinator
Harshal Ved
Proofreader
Sas Editing
Indexer
Monica Ajmera Mehta
Production Coordinator
Arvindkumar Gupta
Cover Work
Arvindkumar Gupta
About the Author
Tiago Antao is a bioinformatician. He is currently studying the genomics of the mosquito
Anopheles gambiae, the main vector of malaria. Tiago was originally a computer scientist
who crossed over to computational biology with an MSc in bioinformatics from the Faculty of
Sciences of the University of Porto, Portugal. He holds a PhD in the spread of drug resistant
malaria from the Liverpool School of Tropical Medicine, UK. Tiago is one of the coauthors
of Biopython—a major bioinformatics package—written on Python. He has also developed
Lositan, a Jython-based selection detection workbench.
In his postdoctoral career, he has worked with human datasets at the University of
Cambridge, UK, and with the mosquito whole genome sequence data at the University
of Oxford, UK. He is currently working as a Sir Henry Wellcome fellow at the Liverpool
School of Tropical Medicine.
I would like to take this opportunity to acknowledge everyone at Packt
Publishing, especially Gaurav Sharma, my very patient development editor.
The quality of this book owes much to the excellent work of the reviewers
who provided outstanding comments. Finally, I would like to thank Ana for all
that she endured during the writing of this book.
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