## Pneumonia Detection from Chest X-Ray Images using Transfer Learning
<pre>
Domain : Computer Vision, Machine Learning
Sub-Domain : Deep Learning, Image Recognition
Techniques : Deep Convolutional Neural Network, ImageNet, Inception
Application : Image Recognition, Image Classification, Medical Imaging
</pre>
### Description
<pre>
1. Detected Pneumonia from Chest X-Ray images using Custom Deep Convololutional Neural Network and by retraining pretrained model “InceptionV3” with 5856 images of X-ray (1.15GB).
2. For retraining removed output layers, freezed first few layers and fine-tuned model for two new label classes (Pneumonia and Normal).
3. With Custom Deep Convololutional Neural Network attained testing accuracy 89.53% and loss 0.41.
</pre>
#### Code
<pre>
GitHub Link : <a href=https://github.com/anjanatiha/Detection-of-Pneumonia-from-Chest-X-Ray-Images>Detection of Pneumonia from Chest X-Ray Images(GitHub)</a>
GitLab Link : <a href=https://gitlab.com/anjanatiha/Detection-of-Pneumonia-from-Chest-X-Ray-Images>Detection of Pneumonia from Chest X-Ray Images(GitLab)</a>
Portfolio : <a href=https://anjanatiha.wixsite.com/website>Anjana Tiha's Portfolio</a>
</pre>
#### Dataset
<pre>
Dataset Name : Chest X-Ray Images (Pneumonia)
Dataset Link : <a href=https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia>Chest X-Ray Images (Pneumonia) Dataset (Kaggle)</a>
: <a href=https://data.mendeley.com/datasets/rscbjbr9sj/2>Chest X-Ray Images (Pneumonia) Dataset (Original Dataset)</a>
Original Paper : <a href=https://www.cell.com/cell/fulltext/S0092-8674(18)30154-5>Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning</a>
(Daniel S. Kermany, Michael Goldbaum, Wenjia Cai, M. Anthony Lewis, Huimin Xia, Kang Zhang)
https://www.cell.com/cell/fulltext/S0092-8674(18)30154-5
</pre>
<pre>
<b>Dataset Details</b>
Dataset Name : Chest X-Ray Images (Pneumonia)
Number of Class : 2
Number/Size of Images : Total : 5856 (1.15 Gigabyte (GB))
Training : 5216 (1.07 Gigabyte (GB))
Validation : 320 (42.8 Megabyte (MB))
Testing : 320 (35.4 Megabyte (MB))
<b>Model Parameters</b>
Machine Learning Library: Keras
Base Model : InceptionV3 && Custom Deep Convolutional Neural Network
Optimizers : Adam
Loss Function : categorical_crossentropy
<b>For Custom Deep Convolutional Neural Network : </b>
<b>Training Parameters</b>
Batch Size : 64
Number of Epochs : 30
Training Time : 2 Hours
<b>Output (Prediction/ Recognition / Classification Metrics)</b>
<b>Testing</b>
Accuracy (F-1) Score : 89.53%
Loss : 0.41
Precision : 88.37%
Recall (Pneumonia) : 95.48% (For positive class)
<!--Specificity : -->
</pre>
##### Sample Output:
<kbd>
<img src=https://github.com/anjanatiha/Detection-of-Pneumonia-from-Chest-X-Ray-Images/blob/master/demo/sample/sample.png>
</kbd>
<kbd>
<a href=https://github.com/anjanatiha/Detection-of-Pneumonia-from-Chest-X-Ray-Images/blob/master/demo/images/result.png>See More Images</a>
</kbd>
##### Confusion Matrix:
<kbd>
<img src=https://github.com/anjanatiha/Detection-of-Pneumonia-from-Chest-X-Ray-Images/blob/master/demo/report/CM.png alt="Confusion Matrix" width=800px height=600px>
</kbd>
#### Tools / Libraries
<pre>
Languages : Python
Tools/IDE : Anaconda
Libraries : Keras, TensorFlow, Inception, ImageNet
</pre>
#### Dates
<pre>
Duration : October 2018 - Current
Current Version : v1.0.0.3
Last Update : 12.16.2018
</pre>
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Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning-master.zip (28个子文件)
Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning-master
LICENSE 1KB
code
obsolete
Short-Copy1.ipynb 101KB
Detection of Pneumonia from Chest X-Ray Images Modulerized.ipynb 504KB
Detection of Pneumonia from Chest X-Ray Images-Copy1.ipynb 33KB
finetuning_torchvision_models.ipynb 52KB
Detection of Pneumonia from Chest X-Ray Images 1.0.0.2.ipynb 669KB
Detection of Pneumonia from Chest X-Ray Images Final.ipynb 3.79MB
Detection of Pneumonia from Chest X-Ray Images Modulerized 4.ipynb 192KB
Detection of Pneumonia from Chest X-Ray Images 1.0.0.1.ipynb 747KB
util_helper.ipynb 3KB
Detection of Pneumonia from Chest X-Ray Images - Copy.ipynb 1.95MB
plot_precision_recall.ipynb 122KB
Detection of Pneumonia from Chest X-Ray Images.ipynb 34KB
Short2-Copy1.ipynb 28KB
Short_new.ipynb 118KB
Short.ipynb 102KB
.ipynb_checkpoints
transfer_learning_tutorial-checkpoint.ipynb 15KB
transfer_learning_tutorial.ipynb 15KB
Detection of Pneumonia from Chest X-Ray Images2.ipynb 150KB
Detection of Pneumonia from Chest X-Ray Images 1.0.0.3.ipynb 2.54MB
requirements.txt 348B
setup.py 0B
demo
images
result.png 674KB
obsolete
result.png 1.31MB
sample.png 200KB
sample
sample.png 168KB
report
CM.png 29KB
README.md 4KB
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