# MRI_T1rho_T2star_reliability
A collection of Matlab M-files for reading Philips DICOM MRI T1rho and T2star knee image data, registering the spin lock or echo times using Melastix and elastix, reading OsiriX segmentation CSV files and calculating T1rho or T2star for regions of interest based on tibiofemoral contact.
Please see ImageAnalysisPipeline6.pdf for a flowchart for the sequence of execution of Matlab M-files.
Please see the header comments in the M-files.
Note that the data must be in particular directories.
An additional region of interest on the posterior femoral condyles (not in contact with the tibia) was added to the analysis. Please see ImageAnalysisPipeline7.pdf for a flowchart for the sequence of execution of Matlab M-files.
M-files for the analysis of the entire cartilage regions (lateral and medial femur, and lateral and medial tibia) were added. See mri_fitra.m.
Additional M-files for postprocessing the results for publication figures were added.
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用于处理膝关节MRI软骨分割和计算T1rho和T2的Matlab文件.zip
共180个文件
m:163个
txt:6个
pdf:3个
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用于处理膝关节MRI软骨分割和计算T1rho和T2的Matlab文件.zip (180个子文件)
cp_param.bat 2KB
del_mfiles.bat 760B
UnloadedFemPlugs.csv 28KB
IntersectionCircleLine.docx 13KB
seg_2rois_plt.m 46KB
seg_2rois.m 46KB
seg_rois_cmpx2.m 43KB
seg_rois_cmp.m 42KB
seg_2rois_bckup.m 35KB
rd_dicom_m.m 30KB
seg_roisx2.m 28KB
seg_rois.m 28KB
seg_roisT2s.m 28KB
rd_dicom1.m 26KB
rd_dicom0.m 26KB
rd_dicom2.m 26KB
rd_dicom.m 26KB
mri_fitr3u.m 24KB
mri_fitr4u.m 22KB
corr_plts.m 21KB
mri_fitra.m 20KB
tcart08_sag.m 19KB
rd_dicomT2s_mask.m 19KB
contact_chk.m 19KB
corr_plts4.m 17KB
mri_fitr5.m 16KB
rd_dicomT2s.m 16KB
contact_chkp.m 16KB
mri_fitr4u_plt.m 16KB
mri_fitr3.m 16KB
mri_fitr3x2.m 16KB
dicom_chk2.m 16KB
mri_fitr2.m 16KB
all_seg_rois.m 16KB
mri_fitr3_0.m 16KB
mri_fitr4x2.m 15KB
mri_fitr4.m 15KB
mri_fitr.m 15KB
seg_roisT2s1.m 15KB
all_seg_rois_bck.m 14KB
cmprt_ana_all.m 13KB
rois_fig.m 12KB
dicom_chk.m 12KB
cmprt_ana.m 11KB
reg_ana.m 11KB
cmprt_anau.m 11KB
cmprt_ana4.m 11KB
cmprt_ana4u.m 10KB
rm_overlap2.m 9KB
rm_overlap.m 9KB
rm_overlap3.m 9KB
t1r_s1001_chk.m 9KB
contact_chk3.m 9KB
contact_chk2.m 9KB
plt_csv5.m 9KB
dftregistration.m 8KB
mk2_tri_2df.m 7KB
dicom_lst2.m 7KB
mk_contct.m 7KB
tcthk_cmp.m 7KB
fem_plan.m 7KB
cmprt_pltu.m 7KB
cyl_pwl.m 7KB
mk2_tri_2d.m 7KB
cmprt_plt4u.m 7KB
cyl_pl3.m 6KB
T1r3d_calc.m 6KB
mk_contact.m 6KB
mk_tri_2df.m 6KB
cthk_wri.m 6KB
midline.m 6KB
series_time.m 6KB
mk_tri4_2dc.m 5KB
cyl_pwl1.m 5KB
tcartrc.m 5KB
mk_tri_2d.m 5KB
cmprt_plt.m 5KB
registr_reg.m 5KB
cmprt_plt4.m 5KB
reg_plt.m 5KB
t1r_s301_chk.m 5KB
pwl_contct.m 5KB
cmprt_plta.m 5KB
rd_rois3.m 5KB
cr_mask2p.m 4KB
cmprt_plt4us.m 4KB
rd_roi6.m 4KB
lisect4.m 4KB
rd_rois.m 4KB
rd_rois2.m 4KB
lisect5.m 4KB
lsect5.m 4KB
chk_3d_2d.m 4KB
tcart_thk_comp.m 4KB
cyl_pl3_bckup.m 4KB
lisect4a.m 4KB
lsect4.m 4KB
cyl_pwl_bck2.m 4KB
res2xlsx.m 4KB
cr_mask2f.m 3KB
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