pandas-plink-1.2.5.tar.gz

# pandas-plink [](https://pypi.python.org/pypi/pandas-plink/) [](https://pypi.python.org/pypi/pandas-plink/) [](https://anaconda.org/conda-forge/pandas-plink) [](https://anaconda.org/conda-forge/pandas-plink) [](https://pandas-plink.readthedocs.io/en/latest/) [](https://www.codacy.com/app/danilo.horta/pandas-plink?utm_source=github.com&utm_medium=referral&utm_content=limix/pandas-plink&utm_campaign=Badge_Grade) PLINK reader for Python. It reads binary PLINK files into [Pandas](http://pandas.pydata.org) data frame and [Dask](http://dask.pydata.org/en/latest/index.html) array. This package handles larger-than-memory data sets by reading the SNP matrix on-demand. ## Install The recommended way of installing it is via [conda](http://conda.pydata.org/docs/index.html) ```bash conda install -c conda-forge pandas-plink ``` An alternative way would be via pip ``` pip install pandas-plink ``` ## Running the tests After installation, you can test it ``` python -c "import pandas_plink; pandas_plink.test()" ``` as long as you have [pytest](http://docs.pytest.org/en/latest/). ## Usage It is as simple as ```python from pandas_plink import read_plink (bim, fam, G) = read_plink('/path/to/data') ``` Refer to [documentation](http://pandas-plink.readthedocs.io/en/latest/) for more information. ## Authors * **Danilo Horta** - [https://github.com/Horta](https://github.com/Horta) ## License This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details