parallel-netcdf-1.8.1.tar.gz_-baijiahao_gavez1d_pNetCDF_parallel

these are some rough notes for porting code from the serial netcdf api to the pnetcdf API. Pnetcdf is very similar but there are some changes that have to be made: . the nc_* functions are called ncmpi_* . the nf_* functions are called nfmpi_* . ncmpi_open takes a communicator and an info structure, in addition to the parameters in the serial nc_open() For example: status = nc_open(path, NC_NOWRITE, &ncid); becomes status = ncmpi_open(MPI_COMM_WORLD, path, NC_NOWRITE, MPI_INFO_NULL, &ncid); . if you make any independent calls ( those not ending in _all), you must put yourself into independent data mode with ncmpi_begin_indep_data(ncid) and ncmpi_end_indep_data(ncid) . FILL_DOUBLE and FILL_FLOAT are called NC_FILL_DOUBLE and NC_FILL_FLOAT respectively. We do not define these NetCDF-2.x era constants in pnetcdf. . #include <mpi.h> . If you want, define a communicator. MPI_COMM_WORLD should work ok for most things. . somewhere near main, call MPI_Init(): pnetcdf won't do that for you. . pnetcdf does not implement nc_advise . pnetcdf does not support all types that serial netcdf supports. see src/lib/TODO for more specifics . If for some reason your code uses 'ptrdiff_t' types, consider using MPI_Offset types . likewise, in many places where serial netcdf takes size_t types, we instead take MPI_Offset types . Fortran users should use '#include <mpif.h>' and '#include "pnetcdf.inc"', instead of using the Fortran INCLUDE directive. . Fortran 90 users can use 'use mpi' and 'use pnetcdf'. . Fortran dimension sizes should be declared as type INTEGER(KIND=MPI_OFFSET_KIND)