isomiR_biogenesis
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2021-03-15
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isomiR_biogenesis-main.zip （91个子文件） 
isomiR_biogenesis-main scripts analysis subseq 
get_valuable_kmers.py 2KB get_valuable_subseq.py 2KB run_all_kmers.bash 236B run_all_subseq.bash 240B shifts main_isomiRs_TCGA_stability.py 2KB get_shift_unstable_isomiRs.py 1KB run_all.bash 209B fractions main_isomiRs_TCGA_stability.py 1KB run_all.bash 209B data_preparation extract_local_cleavage_nucleotides.py 9KB merge_main_isomiRs_across_TCGA.py 2KB prepare_miRBase.py 861B identify_main_isomiRs.py 4KB plots main_isomiRs shifts 
5term_5p.png 81KB 5term_3p.png 86KB 3term_3p.png 86KB 3term_5p.png 82KB fractions 5term_5p.png 107KB 5term_3p.png 113KB 3term_3p.png 117KB 3term_5p.png 114KB LICENSE 1KB processed_data miRBase miRBase.pkl 6.84MB TCGA main_consensus_isomiRs.tsv 5KB local_cleavage_nucleotides 5term_5p_gap_2.tsv 5KB 5term_5p_ungap_2.tsv 5KB 5term_5p_gap_3.tsv 5KB 3term_3p_gap_2.tsv 5KB 5term_3p_ungap_2.tsv 5KB 5term_5p_gap_4.tsv 5KB 3term_3p_ungap_3.tsv 5KB 5term_5p_ungap_3.tsv 5KB 3term_3p_ungap_4.tsv 5KB 5term_3p_gap_2.tsv 5KB 5term_5p_ungap_1.tsv 4KB 5term_3p_gap_3.tsv 5KB 5term_3p_gap_1.tsv 4KB 3term_3p_ungap_2.tsv 5KB 5term_3p_ungap_1.tsv 4KB 3term_3p_gap_4.tsv 5KB 3term_5p_gap_1.tsv 4KB 3term_5p_gap_4.tsv 5KB 3term_5p_ungap_4.tsv 5KB 5term_3p_ungap_4.tsv 5KB 5term_5p_gap_1.tsv 4KB 5term_3p_ungap_3.tsv 5KB 3term_5p_ungap_3.tsv 5KB 3term_3p_gap_3.tsv 5KB 3term_5p_gap_2.tsv 5KB 5term_5p_ungap_4.tsv 5KB 5term_3p_gap_4.tsv 5KB 3term_5p_gap_3.tsv 5KB 3term_3p_gap_1.tsv 4KB 3term_5p_ungap_2.tsv 5KB 3term_3p_ungap_1.tsv 4KB 3term_5p_ungap_1.tsv 4KB main_isomiRs.tsv 240KB README.md 356B .gitignore 2KB raw_data miRBase miRNA.str 9.18MB TCGA isomiR_TCGA-SKCM.tsv 1.57MB isomiR_TCGA-LGG.tsv 8.75MB isomiR_TCGA-KIRC.tsv 6.89MB isomiR_TCGA-KIRP.tsv 4.53MB isomiR_TCGA-LIHC.tsv 6.01MB isomiR_TCGA-UCS.tsv 1.02MB isomiR_TCGA-BRCA.tsv 15.41MB isomiR_TCGA-CHOL.tsv 603KB isomiR_TCGA-PRAD.tsv 7.2MB isomiR_TCGA-SARC.tsv 3.19MB isomiR_TCGA-STAD.tsv 6.47MB isomiR_TCGA-UCEC.tsv 9.99MB isomiR_TCGA-CESC.tsv 5.3MB isomiR_TCGA-HNSC.tsv 9MB isomiR_TCGA-PAAD.tsv 3.15MB isomiR_TCGA-LUSC.tsv 8.11MB isomiR_TCGA-MESO.tsv 1.45MB isomiR_TCGA-THYM.tsv 2.74MB isomiR_TCGA-OV.tsv 7.48MB isomiR_TCGA-TGCT.tsv 3.22MB isomiR_TCGA-READ.tsv 2.64MB isomiR_TCGA-UVM.tsv 1.36MB isomiR_TCGA-LUAD.tsv 9.1MB isomiR_TCGA-ESCA.tsv 2.73MB isomiR_TCGA-DLBC.tsv 714KB isomiR_TCGA-ACC.tsv 1.29MB isomiR_TCGA-THCA.tsv 10.75MB isomiR_TCGA-BLCA.tsv 6.64MB isomiR_TCGA-PCPG.tsv 3.73MB isomiR_TCGA-COAD.tsv 6.87MB isomiR_TCGA-KICH.tsv 1.22MB资源评论
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