longev-mgen：“长寿的元基因组学”项目 （117个子文件） 
activate 446B activate 16B bibliography.bib 656KB conda 8B american-society-for-microbiology-with-doi.csl 5KB american-society-for-microbiology.csl 5KB msphere.csl 946B style.csl 46B
example_style.docx 89KB coverpage.docx 21KB env 327B .gitattributes 82B .gitignore 175B metabinning_and_strain_variation_muribaculaceae.ipynb 149KB annotation_ordination.ipynb 46KB phylogenetic_tree_figure.ipynb 27KB B1_inter_strain_comparison.ipynb 21KB genomic_diagrams.ipynb 18KB otu_correlation_and_aca_response.ipynb 9KB match_2019_2020_otus.ipynb 7KB genome_statistics_table.ipynb 4KB MathJax.js 2KB matplotlibrc 32B submission.md 62KB NOTES.md 44KB TODO.md 2KB README.md 198B
figure_placeholder.png 4KB
starch_related_PULs.pptx 60KB plot_nucmer_comparison.py 15KB plotting.py 9KB dm.py 8KB cluster_contigs.py 6KB data.py 6KB Gblocks.py 5KB depth_trim_contigs.py 5KB count_dnds.py 5KB correlation_trim_contigs.py 5KB pick_marker_genes.py 3KB calculate_per_position_stats.py 2KB transform_blastp_to_similarity.py 2KB pick_minimal_domain_set.py 2KB estimate_contig_coverage.py 2KB plot_contig_ordination.py 2KB concat_alignments.py 2KB format_signalp_data.py 2KB stats.py 1KB match_paired_reads.py 1KB squeeze_alignment.py 1KB cdhit_to_cluster_mapping.py 1KB compare_site_variants.py 970B plot_position_correlations_histogram.py 964B parse_domtbl_to_domains.py 851B sort_bib.py 837B format_hmm_database_descriptions.py 704B parse_prokka_features.py 694B mcl_output_to_map.py 667B fetch_sequence_fragment.py 643B calculate_contig_cvrg_all_libs.py 588B concat_tables.py 568B group_by_domain_structure.py 440B ipynb_output_filter.py 435B drop_bad_hmmalign.py 390B format_tmhmm_data.py 384B unstack_cvrg.py 342B parse_kegg_blastp.py 280B get_ordered_leaves.py 279B misc.py 269B ipython_kernel_config.py 246B count_seq_lengths.py 223B jupyter_notebook_config.py 135B cli.py 0B __init__.py 0B fastuniq_wrapper.sh 431B fetch_bin.sh 147B jobscript.sh 105B jobscript.sh 74B genome_comparison.snake 17KB strain_variation.snake 5KB cazy.snake 3KB curation.snake 1KB Snakefile 87KB schema.2.sql 12KB query_biosample_upload.sql 4KB schema.1.sql 4KB schema.0.sql 3KB opf_summary_statistics.sql 2KB B1_genomic_variants.sql 2KB query_bin_merger.sql 1KB query_longev_rrs_taxonomy.sql 1KB putative_PUL_regions.sql 1KB all_genome_annotations.sql 1013B secreted_starch_active_enzymes.sql 847B query_longev_rrs_count.sql 408B
muri_comparison.svg 1.13MB genome.tsv 18KB library.tsv 17KB genome_group.tsv 5KB asmbl_group.tsv 4KB extraction.tsv 4KB共 117 条
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