酵母-GEM：酿酒酵母的共识GEM
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2021-02-04
02:22:49
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酵母-GEM：酿酒酵母的共识GEM （137个子文件） 
BiGGrxnDictionary_newIDs.csv 54KB BiGGmetDictionary.csv 28KB BiGGmetDictionary_newIDs.csv 20KB BiGGrxnDictionary.csv 20KB lipidAbbreviations.csv 769B requirements.in 72B dev-requirements.in 61B BiGGidsCompliance.ipynb 16KB cobrapy-compliance.ipynb 8KB essentialGenes.m 67KB checkrxnDirection.m 44KB checkSmatrixMNX.m 23KB getAllPath.m 15KB mapKEGGID.m 12KB modMetsandSmatrix.m 9KB modifyID.m 9KB addBiomassUpdate.m 9KB SubstrateUsage.m 7KB mapMNXMID.m 7KB convertYmn2FBC2.m 7KB UpdateDBnewRxn.m 6KB addDBnewRxn.m 6KB addFAEnewRxn.m 5KB addBiologRxnToGEM.m 5KB addMetabolomicsRxnToGEM.m 5KB MissingTransDeadEnd.m 5KB makeFormulasCompliant.m 5KB checkRxnBalance.m 5KB mapIDsViaMNXref.m 5KB saveYeastModel.m 5KB findInDB.m 4KB addGapfillingRxnToGEM.m 4KB fixBiomassComp.m 4KB getMissingFields.m 4KB GetMNXID.m 4KB increaseVersion.m 4KB growth.m 4KB sumBioMass.m 4KB display_rxnMetInfo.m 3KB clusterBiomass.m 3KB fitGAM.m 3KB checkMetBalance.m 3KB addSLIMErxns.m 3KB anaerobicModel.m 3KB changerxnDirection.m 3KB changerxn.m 2KB addiSce926changes.m 2KB CheckEnergyProduction.m 2KB addSBOterms.m 2KB modelCorrections.m 2KB minimal_Y6.m 2KB CheckBalanceforSce.m 2KB addDBNewGeneAnnotation.m 2KB addTransNewGPR.m 2KB takeOutFromFormula.m 2KB get_lnRevIdx.m 2KB findSubSystem.m 2KB addConfidenceScores.m 2KB scaleBioMass.m 1KB updateMetaboliteAnnotation.m 1KB downloadMNXdb.m 1KB addGeneNames.m 1KB rescalePseudoReaction.m 914B findDuplicatedRxns.m 875B updateMetaboliteFormula.m 875B addBiGGidentifiers.m 770B deleteRepeated.m 700B changeRules.m 540B loadYeastModel.m 527B getNewIndex.m 446B yeastGEM.mat 696KB LICENSE.md 17KB history.md 12KB README.md 6KB README.md 210B README.md 199B README.md 175B README.md 145B README.md 121B README.md 79B README.md 77B README.md 55B io.py 4KB __init__.py 0B swissprot.tsv 3.64MB kegg.tsv 3.29MB DBnewGeneAnnotation.tsv 924KB MetaCyc_deltaG.tsv 368KB rxnDirectionInfo.tsv 310KB grpContribution_deltaG.tsv 288KB TransRxnGeneAnnotation.tsv 188KB modMetsandSmatrix.tsv 148KB SGDgeneNames.tsv 81KB metabolite_manual_curation.tsv 55KB modifyID.tsv 49KB DBnewrRxnMatrix.tsv 35KB Biolog_newRxnMatrix.tsv 27KB DBnewRxnProp.tsv 27KB Yeast7.6MNXMetMappingList.tsv 26KB DBnewRxnMetAnnotation.tsv 24KB共 137 条
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