binary+code.zip （64个子文件） 
propagate4.awk 7KB agplinks.awk 813B liftover.awk 1KB
bin ParameterParser.class 7KB Misc.class 3KB ContigInterval$MapComp.class 1KB CoverageAnalyser$Zeta.class 1KB CleanMap.class 15KB PlaceAndOrientContigs.class 123KB Map2Bed$Interval.class 2KB Misc$ArrayIndexComparator.class 2KB InputData.class 14KB FindContigErrors.class 12KB PlaceAndOrientContigs$PossibleError.class 2KB Misc$ArrayIndexComparator2.class 2KB PlaceAndOrientContigs$LongComparator0.class 851B Input.class 6KB PlaceAndOrientContigs$CalculateBest.class 4KB CleanMap$CleanMarker.class 1KB Proximity.class 16KB CoverageAnalyser$Gaussian.class 1KB PlaceAndOrientContigs$LongComparator1.class 851B Misc$LongComparator1.class 780B CoverageHMM.class 12KB Misc$LongComparator0.class 780B CoverageAnalyser.class 9KB Marker.class 4KB LiftoverHaplotypes.class 2KB ContigInterval.class 9KB Map2Bed.class 8KB joinIntervals.awk 641B removeHaplotypes.awk 2KB makeagp2.awk 1KB pickorientation.awk 99B pickbed.awk 811B propagate2.awk 3KB propagate.awk 2KB prune.awk 648B removeOverlaps.awk 3KB makeagp.awk 920B lepanchor_wrapper2.sh 8KB contigLength.awk 207B lepanchor_wrapper.sh 7KB src Proximity.java 20KB LiftoverHaplotypes.java 1KB CoverageAnalyser.java 12KB Marker.java 3KB Misc.java 6KB Input.java 6KB InputData.java 14KB CoverageHMM.java 17KB FindContigErrors.java 16KB ContigInterval.java 9KB ParameterParser.java 7KB Map2Bed.java 10KB CleanMap.java 17KB PlaceAndOrientContigs.java 159KB makeagp_full2.awk 735B findFullHaplotypes.awk 2KB makeagp_full.awk 609B makefasta.awk 2KB cleanmap.awk 2KB COPYING 34KB plot_marey.R 1KB资源评论
