Aflav_thesis_supp
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2021-03-11
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Aflav_thesis_supp-main.zip （59个子文件） 
Aflav_thesis_supp-main chapter3 tables_and_figs 
allele_frequencies.txt 1.21MB
genetic_diversity.het 41KB allele_frequency_change.txt 1.3MB genealogical_genetic_contributions.txt 40KB Pedigree.txt 23KB pvals.txt 1.54MB maybe_relatives.txt 51KB code allele_freq_sims nullMAFsimulations.R 16KB cluster MAF_clusterRun.R 7KB MAF_clusterRun_control.sh 2KB extract_confint.R 3KB nullMAFsimulations.sh 447B pedigree_construction_R3.6.R 17KB allele_frequency_change.R 20KB genetic_contributions.R 13KB README.md 4KB chapter2 tables_and_figs A.flavicollis_demographic_data.txt 39KB
adapter_primer_sequences.pdf 561KB sample_groups.txt 2KB genotyping_error_rates.txt 54KB coverage_duplicates_merged.txt 53KB relatedness_results_duplicatesMerged.txt 4.03MB parameter_optimisation_metrics.txt 447KB code stacks_data_extraction.sh 9KB denovo_pipeline.sh 11KB M.musculus_insilico_digestion_parallel_SbfI_MseI.R 12KB denovo_map_parameter_optimisation.sh 2KB stacks_metrics.R 12KB chapter4 tables_and_figs heritability_diagnostic_plots repeatability mb_resid_vs_fitted_males_repeatability.pdf 14KB mb_bmr_resid_vs_fitted_females_repeatability.pdf 11KB qqplot_female_repeatability.pdf 16KB sex_mb_residuals_vs_fitted_repeatability.pdf 19KB qqplot_male_repeatability.pdf 29KB mb_resid_vs_fitted_females_repeatability.pdf 9KB mb_residuals_vs_fitted_repeatability.pdf 19KB qqplot_repeatability.pdf 40KB mb_bmr_resid_vs_fitted_males_repeatability.pdf 16KB sex_mb_bmr_residuals_vs_fitted_repeatability.pdf 22KB heritability mb_females_residuals_vs_fitted_heritability.pdf 6KB sex_mb_residuals_vs_fitted_heritability.pdf 9KB mb_bmr_males_residuals_vs_fitted_heritability.pdf 8KB qqplot_females_heritability.pdf 13KB qqplot_heritability.pdf 16KB qqplot_males_heritability.pdf 8KB sex_mb_bmr_residuals_vs_fitted_heritability.pdf 10KB mb_males_residuals_vs_fitted_heritability.pdf 8KB mb_bmr_females_residuals_vs_fitted_heritability.pdf 6KB mb_residuals_vs_fitted_heritability.pdf 9KB cluster_analysis k6.pdf 26KB k5.pdf 26KB k10.pdf 28KB k3.pdf 25KB k9.pdf 27KB k8.pdf 27KB cluster_indices.txt 449B k7.pdf 27KB k4.pdf 26KB code torpor_analysis_REML.R 28KB cluster_analysis.R 11KB
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