细节增强的matlab代码-astheriscPackage:使用代谢单物种群落模型搜索并发现产品合成的热力学优势
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2021-05-27
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细节增强的matlab代码-astheriscPackage:使用代谢单物种群落模型搜索并发现产品合成的热力学优势 （103个子文件） 
.gitignore 2KB iML1515double_dG0.json 553KB ecolicore2triple_dG0.json 197KB ecolicore2double_dG0.json 161KB dG0_toymodelDouble.json 1KB LICENSE 11KB astherisc.m 76KB max_min_driving_force_pathway_higher_mdf_max_exchanges.m 20KB max_min_driving_force_pathway_ratio_range_max_exchanges.m 20KB max_min_driving_force_pathway_ratio_range.m 20KB getDirectAndIndirectBottlenecks.m 13KB CNAcomputeOptMDFpathway_higher_mdf_max_exchanges.m 6KB CNAcomputeOptMDFpathway_ratio_range_max_exchanges.m 6KB CNAcomputeOptMDFpathway_ratio_range.m 6KB getDetailedSolutionString.m 5KB setup_driving_force_constraints_ratio_ranges.m 5KB loadAndSavePublicationCommunityModelsAsMat.m 4KB kdo8p_example.m 3KB loadAndSaveCommModelPyCommunityModel.m 3KB getGeneralMdfMilpParameters.m 2KB generateToyModelReport.m 2KB generalPublicationRunSettingsTripleModels.m 2KB getValFileString.m 2KB getConcentrationRanges.m 2KB getCommunityModelWithSetExchanges.m 2KB generalPublicationRunSettingsDoubleModels.m 2KB getMaximalYieldOfCommunityModel.m 1KB PSBCNAFindMetabolite.m 1KB PSBCNAFindReactionInCellstring.m 1KB PSBCNAFindReaction.m 1KB run__model_ecolicore2double__yieldFactor_0_98__maxExchanges_inf.m 919B run__model_iML1515double__yieldFactor_0_98__maxExchanges_inf.m 913B getNondefaultExchangeReactionIdsFromCommunityModel.m 906B run__model_ecolicore2double__yieldFactor_0_6__maxExchanges_inf.m 822B run__model_ecolicore2triple__yieldFactor_0_98__maxExchanges_inf.m 810B run__model_ecolicore2double__yieldFactor_0_98__maxExchanges_9.m 807B run__model_ecolicore2triple__yieldFactor_0_98__maxExchanges_9.m 807B run__model_iML1515double__yieldFactor_0_6__maxExchanges_inf.m 805B run__model_ecolicore2double__yieldFactor_0_4__maxExchanges_inf.m 792B run__model_ecolicore2triple__yieldFactor_0_4__maxExchanges_inf.m 740B run__model_ecolicore2double__yieldFactor_0_8__maxExchanges_inf.m 740B run__model_ecolicore2triple__yieldFactor_0_8__maxExchanges_inf.m 740B run__model_ecolicore2triple__yieldFactor_0_6__maxExchanges_inf.m 740B run__model_ecolicore2double__yieldFactor_0_8__maxExchanges_9.m 738B run__model_ecolicore2triple__yieldFactor_0_6__maxExchanges_9.m 738B run__model_ecolicore2triple__yieldFactor_0_8__maxExchanges_9.m 738B run__model_ecolicore2double__yieldFactor_0_6__maxExchanges_9.m 738B run__model_ecolicore2triple__yieldFactor_0_4__maxExchanges_9.m 738B run__model_ecolicore2double__yieldFactor_0_4__maxExchanges_9.m 738B run__model_iML1515double__yieldFactor_0_4__maxExchanges_inf.m 737B run__model_iML1515double__yieldFactor_0_8__maxExchanges_inf.m 737B run__model_iML1515double__yieldFactor_0_98__maxExchanges_9.m 736B run__model_iML1515double__yieldFactor_0_4__maxExchanges_9.m 735B run__model_iML1515double__yieldFactor_0_6__maxExchanges_9.m 735B run__model_iML1515double__yieldFactor_0_8__maxExchanges_9.m 735B getPublicationRunReportPath.m 681B getReactionSpeciesIndexMapping.m 648B generalPublicationRunSettings.m 637B getSpeciesIdsFromCommunityModel.m 635B getAllCommunityExchangeReactionsFromCommunityModel.m 486B getIdAsString.m 146B generalEcolicore2doubleModelPath.m 99B generalEcolicore2tripleModelPath.m 99B generaliML1515doubleModelPath.m 96B iML1515double.mat 1.9MB ecolicore2triple.mat 377KB ecolicore2double.mat 247KB toymodelDouble.mat 2KB README.md 7KB publication_run_results_statistics.py 8KB
report__model_iML1515double__maxYield_0.98__numMaxExchanges_Inf.txt 2.4MB report__model_iML1515double__maxYield_0.8__numMaxExchanges_Inf.txt 1.7MB report__model_iML1515double__maxYield_0.98__numMaxExchanges_9.txt 1.45MB report__model_iML1515double__maxYield_0.6__numMaxExchanges_Inf.txt 1.39MB report__model_iML1515double__maxYield_0.8__numMaxExchanges_9.txt 1.34MB report__model_iML1515double__maxYield_0.4__numMaxExchanges_Inf.txt 1.34MB report__model_iML1515double__maxYield_0.4__numMaxExchanges_9.txt 1.19MB report__model_ecolicore2double__maxYield_0.6__numMaxExchanges_Inf.txt 1.13MB report__model_ecolicore2triple__maxYield_0.98__numMaxExchanges_Inf.txt 1.1MB report__model_ecolicore2triple__maxYield_0.6__numMaxExchanges_Inf.txt 1.08MB report__model_iML1515double__maxYield_0.6__numMaxExchanges_9.txt 1.02MB report__model_ecolicore2double__maxYield_0.98__numMaxExchanges_Inf.txt 1.02MB report__model_ecolicore2triple__maxYield_0.8__numMaxExchanges_Inf.txt 940KB report__model_ecolicore2double__maxYield_0.8__numMaxExchanges_Inf.txt 861KB report__model_ecolicore2double__maxYield_0.4__numMaxExchanges_Inf.txt 829KB report__model_ecolicore2triple__maxYield_0.4__numMaxExchanges_Inf.txt 777KB report__model_ecolicore2triple__maxYield_0.4__numMaxExchanges_9.txt 762KB report__model_ecolicore2double__maxYield_0.4__numMaxExchanges_9.txt 728KB report__model_ecolicore2triple__maxYield_0.98__numMaxExchanges_9.txt 712KB report__model_ecolicore2double__maxYield_0.98__numMaxExchanges_9.txt 683KB report__model_ecolicore2double__maxYield_0.6__numMaxExchanges_9.txt 642KB report__model_ecolicore2triple__maxYield_0.6__numMaxExchanges_9.txt 638KB report__model_ecolicore2double__maxYield_0.8__numMaxExchanges_9.txt 594KB report__model_ecolicore2triple__maxYield_0.8__numMaxExchanges_9.txt 553KB report__10000_seconds__model_ecolicore2triple__maxYield_0.8__numMaxExchanges_Inf.txt 139KB report__10000_seconds__model_ecolicore2double__maxYield_0.8__numMaxExchanges_Inf.txt 65KB kdo8p_example.txt 23KB toymodelDouble_report.txt 9KB SOURCES.txt 719B iML1515double_model.xml 22.13MB共 103 条
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